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Record W4401328666 · doi:10.1001/jama.2024.0268

Modernizing the Data Infrastructure for Clinical Research to Meet Evolving Demands for Evidence

2024· article· en· W4401328666 on OpenAlexaff
Joseph B. Franklin, Caroline Marra, Kaleab Z. Abebe, Atul J. Butte, Laura J. Esserman, Lee A. Fleisher, Cynthia Grossman, Nancy Kass, Harlan M. Krumholz, Kathy Rowan, Amy P. Abernethy, Ali Abbasi, Stacey J. Adam, Derek C. Angus, Jamy D. Ard, Rachel Bender Ignacio, Michael Berkwits, Scott Berry, Deepak L. Bhatt, Kirsten Bibbins‐Domingo, Robert O. Bonow, Marc Bonten, Sharon A. Brangman, John S. Brownstein, Melinda Buntin, Robert M. Califf, Marion Campbell, Anne Rentoumis Cappola, Anne C. Chiang, Steven R. Cummings, Gregory Curfman, Ralph Gonzalez, Tufia C. Haddad, Roy S. Herbst, Adrian F. Hernandez, Diane Holder, Leora Horn, Grant D. Huang, Alison Huang, Rohan Khera, Walter J. Koroshetz, Martin Landray, Roger Lewis, Tracy A. Lieu, Preeti Malani, Christa Lese Martin, Mark McClellan, Mary Mcdermott, Stephanie R. Morain, Susan A. Murphy, Stuart G. Nicholls, Stephen J. Nicholls, Peter J. O’Dwyer, Bhakti K. Patel, Eric D. Peterson, Sheila A. Prindiville, Joseph S. Ross, Gordon D. Rubenfeld, Christopher Seymour, Rod S Taylor, Joanne Waldstreicher, Tracy Y. Wang

Bibliographic record

VenueJAMA · 2024
Typearticle
Languageen
FieldHealth Professions
TopicElectronic Health Records Systems
Canadian institutionsMcMaster University
Fundersnot available
KeywordsMedicineClinical trialQuality (philosophy)Data qualityRisk analysis (engineering)Data scienceOperations managementPathology

Abstract

fetched live from OpenAlex

Importance: The ways in which we access, acquire, and use data in clinical trials have evolved very little over time, resulting in a fragmented and inefficient system that limits the amount and quality of evidence that can be generated. Observations: Clinical trial design has advanced steadily over several decades. Yet the infrastructure for clinical trial data collection remains expensive and labor intensive and limits the amount of evidence that can be collected to inform whether and how interventions work for different patient populations. Meanwhile, there is increasing demand for evidence from randomized clinical trials to inform regulatory decisions, payment decisions, and clinical care. Although substantial public and industry investment in advancing electronic health record interoperability, data standardization, and the technology systems used for data capture have resulted in significant progress on various aspects of data generation, there is now a need to combine the results of these efforts and apply them more directly to the clinical trial data infrastructure. Conclusions and Relevance: We describe a vision for a modernized infrastructure that is centered around 2 related concepts. First, allowing the collection and rigorous evaluation of multiple data sources and types and, second, enabling the possibility to reuse health data for multiple purposes. We address the need for multidisciplinary collaboration and suggest ways to measure progress toward this goal.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.260
metaresearch head score (Gemma)0.403
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesMetaresearch
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.740
Threshold uncertainty score0.912

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.2600.403
Meta-epidemiology (narrow)0.0020.002
Meta-epidemiology (broad)0.0030.005
Bibliometrics0.0170.021
Science and technology studies0.0040.012
Scholarly communication0.0280.047
Open science0.0110.030
Research integrity0.0090.022
Insufficient payload (model declined to judge)0.0160.012

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.682
GPT teacher head0.678
Teacher spread0.004 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; the direct Gemma label and the distilled Codex classifier agree on what is shown here.

Study designNot applicable
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations25
Published2024
Admission routes1
Has abstractyes

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Same venueJAMASame topicElectronic Health Records SystemsFrench-language works237,207