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Record W4401337535 · doi:10.1111/febs.17243

Oxidative stress‐induced <i>YAP1</i> expression is regulated by <i>NCE102</i>, <i>CDA2</i>, and <i>BCS1</i>

2024· article· en· W4401337535 on OpenAlexafffund
Sarah Takallou, Maryam Hajikarimlou, Mustafa Al‐gafari, Jiashu Wang, Sasi Kumar Jagadeesan, Thomas David Daniel Kazmirchuk, Christina Arnoczki, Houman Moteshareie, Kamaleldin B. Said, Taha Azad, Martin Holčı́k, Bahram Samanfar, Myron L. Smith, Ashkan Golshani

Bibliographic record

VenueFEBS Journal · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicFungal and yeast genetics research
Canadian institutionsAgriculture and Agri-Food CanadaCarleton UniversityCentre Hospitalier Universitaire de SherbrookeUniversité de SherbrookeHealth CanadaUniversity of Ottawa
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsYAP1Oxidative stressReactive oxygen speciesOxidative phosphorylationCell biologyTranslation (biology)BiologyBiochemistryTranscription factorChemistryGeneMessenger RNA

Abstract

fetched live from OpenAlex

Maintaining cellular homeostasis in the face of stress conditions is vital for the overall well‐being of an organism. Reactive oxygen species (ROS) are among the most potent cellular stressors and can disrupt the internal redox balance, giving rise to oxidative stress. Elevated levels of ROS can severely affect biomolecules and have been associated with a range of pathophysiological conditions. In response to oxidative stress, yeast activator protein‐1 (Yap1p) undergoes post‐translation modification that results in its nuclear accumulation. YAP1 has a key role in oxidative detoxification by promoting transcription of numerous antioxidant genes. In this study, we identified previously undescribed functions for NCE102 , CDA2 , and BCS1 in YAP1 expression in response to oxidative stress induced by hydrogen peroxide (H 2 O 2 ). Deletion mutant strains for these candidates demonstrated increased sensitivity to H 2 O 2 . Our follow‐up investigation linked the activity of these genes to YAP1 expression at the level of translation. Under oxidative stress, global cap‐dependent translation is inhibited, prompting stress‐responsive genes like YAP1 to employ alternative modes of translation. We provide evidence that NCE102 , CDA2 , and BCS1 contribute to cap‐independent translation of YAP1 under oxidative stress.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.856

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.273
Teacher spread0.262 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2024
Admission routes2
Has abstractyes

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