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Record W4401507727 · doi:10.1101/2024.08.12.607560

Grape ripening speed slowed down using natural variation

2024· preprint· en· W4401507727 on OpenAlexaff
Luigi Falginella, Gabriele Magris, Simone D. Castellarin, Gregory A. Gambetta, Mark A. Matthews, Michele Morgante, Gabriele Di Gaspero

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldAgricultural and Biological Sciences
TopicHorticultural and Viticultural Research
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsRipeningRipenessVeraisonBerryViticultureBiologyHorticultureVitis viniferaCultivarWineFood science

Abstract

fetched live from OpenAlex

ABSTRACT Understanding ripening patterns and governing ripening speed are central aspects of grapevine ( Vitis vinifera ) berry biology owing to the importance of grape ripeness in winemaking. Despite this, the genetic control of ripening is largely unknown. Here, we report a major quantitative trait locus that controls ripening speed, expressed as speed of sugar accumulation. A haplotype originating from the species Vitis riparia halves maximum speed regardless of crop levels and berry sizes. The sequence of events that are normally completed at the onset of ripening in a two-week period known in viticulture as veraison are taking place at a slower speed, thereby attaining ripeness under milder weather conditions in late summer. V. vinifera cultivars show limited phenotypic variation for ripening speed and no selective sweep in the causal genomic region that could derive from domestication or improvement. Closely related species make up for the lack of standing variation, supplying major effect alleles for adapting grape cultivars to climate change. HIGHLIGHT / SIGNIFICANCE STATEMENT Reducing the speed of fruit ripening genetically is a means for adapting the grape berry developmental program to the changing needs of the wine industry and in response to global warming. We identified a haplotype in a wild grape species that slows down the speed of ripening in progenies of Vitis vinifera by limiting the speed of sugar accumulation throughout the duration of ripening, a condition of great importance for winemakers to harvest their grapes at the desired level of technological ripeness.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.251
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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