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Record W4401812508 · doi:10.1094/pdis-01-24-0252-pdn

First Report of Tobacco Mild Green Mosaic Virus on Eggplants in Reunion Island

2024· article· en· W4401812508 on OpenAlexaboutno aff
Jean‐Michel Lett, M. Hoareau, Babbitha Fenelon, Pierre Lefeuvre, E. Parvedy, Clarisse Clain, Estelle Roux, Janice Minatchy, Nathalie Cassam, Aude Chabirand, Laëtitia Porcher, Mathieu Rolland

Bibliographic record

VenuePlant Disease · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsnot available
Fundersnot available
KeywordsBiologyTobacco mosaic virusMosaicPlant virusVirologyMosaic virusBotanyVirus

Abstract

fetched live from OpenAlex

In February and March 2023, unusual virus-like disease symptoms such as mild mosaic and yellowing were observed on eggplant (Solanum melongena) leaves in a field plot of 233 m2 in size located in the locality of St. Paul in Reunion Island (20°58.394′S, 55°19.019′E). The eggplant field showed a disease incidence of approximately 50%. The recent description of emerging tobamoviruses on solanaceous plants in several parts of the world (Salem et al. 2023), including the sister island of Mauritius (Maudarbaccus et al. 2021), suggested the possible involvement of a tobamovirus. To identify the potential agent(s) causing these symptoms, samples from eight symptomatic plants were collected, dehydrated, and subjected to total RNA extraction using the RNeasy Plant Extraction Kit (Qiagen, France). The presence of tobamoviruses was tested by RT-PCR using generic primers designed to amplify a fragment of the RNA-dependent RNA polymerase (RdRp) of tobamoviruses, which was previously shown to detect 32 tobamoviruses (Li et al. 2018). RT-PCR amplicons of the expected size (880 bp) were obtained from six samples and subjected to direct sequencing in both directions. BLASTn analysis showed that all six assembled nucleotide sequences (GenBank accession nos. PP198308 to PP198313) were very similar to each other (>98.8%) and shared 98.2 to 99.8% similarity to tobacco mild green mosaic virus (TMGMV) genome sequences (GenBank accession nos. MW012408, OK149280, and OK558783) described on pepper (Capsicum annuum L.) in Vietnam (Choi et al. 2020) and tobacco (Nicotiana spp.) in Turkey and Canada, respectively. To obtain a full genome sequence of a Reunion isolate of TMGMV, Illumina RNA sequencing was performed by GeneWiz (Leipzig, Germany) following ribodepletion. A total of ∼54M 2 × 150-nt paired-end reads was obtained. A partial genome sequence of 5,687 nucleotides of the TMGMV isolate Reunion-C23-180-St-Paul-2023 (GenBank accession no. PP198314) was assembled using SPAdes v3.13 (Bankevitch et al. 2012) with a mean position coverage of ∼885,000. The sequence shares the highest nucleotide identity (98.8%) with the isolate “U2” of TMGMV collected in Canada in 2001. Maximum-likelihood phylogenetic analysis confirms that the Reunionese isolate of TMGMV is closely related to isolates of TMGMV from several countries from different continents collected on different solanaceous plants. To confirm that these diseased eggplants were infected by TMGMV, the six positive samples were inoculated into 2-week-old healthy eggplants and tobacco (Nicotiana tabacum cv. Xanthi) plants using mechanical inoculation, according to Ogwok et al. (2010). Two weeks later, mild mosaic symptoms on eggplants (16/16) and tobacco (6/16) were observed on the leaves of the inoculated plants. Moreover, the presence of TMGMV genomic RNA on the symptomatic leaves of the inoculated plants was confirmed by RT-PCR. To our knowledge, this is the first report of TMGMV infecting eggplants in Reunion. Since tobamoviruses are seed-transmitted (Salem et al. 2022), this description represents a first warning signal about the risk of introducing in Reunion Island the highly infectious and rapidly spreading tomato brown rugose fruit virus, which represents a major threat for many tomato growing regions of the world (Salem et al. 2023).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.027
Threshold uncertainty score0.055

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.270
Teacher spread0.228 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations1
Published2024
Admission routes1
Has abstractyes

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