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Wet season environments drive local adaptation in the drought-sensitive timber tree Dicorynia guianensis in French Guiana

2024· preprint· en· W4401864402 on OpenAlexaff
Julien Bonnier, Enrique Saez-Laguna, Thomas Francisco, Olivier Brunaux, Sylvain Schmitt, Stéphane Traissac, Niklas Tysklind, Myriam Heuertz

Bibliographic record

Venuenot available
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic diversity and population structure
Canadian institutionsOntario Neurotrauma Foundation
Fundersnot available
KeywordsMaladaptationLocal adaptationRainforestEcologyGeographyBiodiversityClimate changeAdaptation (eye)Biology

Abstract

fetched live from OpenAlex

Climate change poses threats to biodiversity, particularly in tropical rainforests. How tropical rainforest tree species will respond to climate change is uncertain because their extent of local adaptation, its drivers and genetic basis remain poorly known. Characterizing these and the risks of maladaptation in future climates can inform on possible responses and help design strategies for the conservation. This study focuses on Dicorynia guianensis (Fabaceae), a widespread tree species in French Guiana, known for its sensitivity to drought. We performed genome resequencing on 87 individuals sampled in 11 sites across French Guiana to investigate the genetic structure, diversity, the drivers and the genetic basis of local adaptation. Genetic structure analysis identified three distinct groups: western, inland, and eastern, with similar levels of genetic diversity and distributed in areas with different environmental conditions. Six methods applied to detect genomic signatures of selection revealed region-specific selective sweeps and overlap between SNPs identified through outlier analysis or genome-environment association analyses. The most relevant environmental drivers of selection were potential evapotranspiration of the wettest quarter and precipitation of the coldest quarter, indicating that environmental variables related to high rainfall during the wet season are stronger drivers of local adaptation of D. guianensis than drought. Sites located in inland French Guiana had higher risks of climatic maladaptation than coastal sites. Our results contribute to the understanding of local adaptation and risk of maladaptation in tropical trees. They emphasize the need for area-specific approaches in managing tropical tree under the pressures of climate change.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.027
Threshold uncertainty score0.054

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.229
Teacher spread0.216 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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