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Record W4401897916 · doi:10.1101/2024.08.16.24312135

BMI-related Genetic Factors and COPD Imaging Phenotypes

2024· preprint· en· W4401897916 on OpenAlexaff
Jingzhou Zhang, Matthew Moll, Catherine L. Debban, Brian D. Hobbs, Heena Rijhwani, George R. Washko, Bartolomé R. Celli, Edwin K. Silverman, Per Bakke, Elizabeth C. Oelsner, R. Graham Barr, Àlvar Agustí, Rosa Faner, Guy G. Bruselle, Stephen M. Humphries, David A. Lynch, Josée Dupuis, Ani Manichaikul, George O'connor, Michael H. Cho

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldMedicine
TopicChronic Obstructive Pulmonary Disease (COPD) Research
Canadian institutionsMcGill University
Fundersnot available
KeywordsCOPDMedicineBody mass indexPercentileFramingham Heart StudyHounsfield scaleInternal medicineCardiologyAirwayPopulationObesityRadiologyFramingham Risk ScoreDiseaseComputed tomographySurgery

Abstract

fetched live from OpenAlex

Abstract Background While low body mass index (BMI) is associated with emphysema and obesity is associated with airway disease in chronic obstructive pulmonary disease (COPD), the underlying mechanisms are unclear. Methods We aggregated genetic variants from population-based genome-wide association studies to generate a polygenic score of BMI (PGS BMI ). We calculated this score for participants from COPD-enriched and community-based cohorts and examined associations with automated quantification and visual interpretation of computed tomographic emphysema and airway wall thickness (AWT). We summarized the results using meta-analysis. Results In the random-effects meta-analyses combining results of all cohorts (n=16,349), a standard deviation increase of the PGS BMI was associated with less emphysema as quantified by log-transformed percent of low attenuation areas ≤ 950 Hounsfield units (β= -0.062, p <0.0001) and 15 th percentile value of lung density histogram (β=2.27, p <0.0001), and increased AWT as quantified by the square root of wall area of a 10-mm lumen perimeter airway (β=0.016, p =0.0006) and mean segmental bronchial wall area percent (β=0.26, p =0.0013). For imaging characteristics assessed by visual interpretation, a higher PGS BMI was associated with reduced emphysema in both COPD-enriched cohorts (OR for a higher severity grade=0.89, p =0.0080) and in the community-based Framingham Heart Study (OR for the presence of emphysema=0.82, p =0.0034), and a higher risk of airway wall thickening in the COPDGene study (OR=1.17, p =0.0023). Conclusions In individuals with and without COPD, a higher body mass index polygenic risk is associated with both quantitative and visual decreased emphysema and increased AWT, suggesting genetic determinants of BMI affect both emphysema and airway wall thickening.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.011

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.005
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0010.002
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.292
Teacher spread0.275 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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