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Record W4402134510 · doi:10.1038/s41467-024-51172-5

An international study presenting a federated learning AI platform for pediatric brain tumors

2024· article· en· W4402134510 on OpenAlexafffund
Edward H. Lee, Michelle Han, Jason L. Wright, Michael Kuwabara, Jacob Mevorach, Gang Fu, Olivia Choudhury, Ujjwal Ratan, Michael Zhang, Matthias Wagner, Robert Goetti, Sebastian Toescu, Sébastien Perreault, Hakan Doğan, Emre Altınmakas, Maryam Mohammadzadeh, Kathryn A. Szymanski, Cynthia Campen, Hollie Lai, Azam Eghbal, Alireza Radmanesh, Kshitij Mankad, Kristian Aquilina, Mourad Ben Saïd, Arastoo Vossough, Özgür Öztekin, Birgit Ertl‐Wagner, Tina Young Poussaint, Eric M. Thompson, Chang Yueh Ho, Alok Jaju, John Curran, Vijay Ramaswamy, Samuel Cheshier, Gerald A. Grant, S.S. Wong, Michael E. Moseley, Robert M. Lober, Mattias Wilms, Nils D. Forkert, Nicholas A. Vitanza, Jeffrey H Miller, Laura M. Prolo, Kristen W. Yeom

Bibliographic record

VenueNature Communications · 2024
Typearticle
Languageen
FieldMedicine
TopicArtificial Intelligence in Healthcare and Education
Canadian institutionsHotchkiss Brain InstituteHospital for Sick ChildrenUniversity of CalgaryUniversité de MontréalAlberta Children's HospitalCentre Hospitalier Universitaire Sainte-Justine
FundersNIHR Great Ormond Street Hospital Biomedical Research CentreGarron Family Cancer CentreNational Cancer InstituteAmazon Web ServicesNational Institutes of HealthGreat Ormond Street Institute of Child HealthNational Institute for Health and Care ResearchCanadian Institutes of Health Research
KeywordsComputer scienceWorld Wide WebMedicine

Abstract

fetched live from OpenAlex

While multiple factors impact disease, artificial intelligence (AI) studies in medicine often use small, non-diverse patient cohorts due to data sharing and privacy issues. Federated learning (FL) has emerged as a solution, enabling training across hospitals without direct data sharing. Here, we present FL-PedBrain, an FL platform for pediatric posterior fossa brain tumors, and evaluate its performance on a diverse, realistic, multi-center cohort. Pediatric brain tumors were targeted due to the scarcity of such datasets, even in tertiary care hospitals. Our platform orchestrates federated training for joint tumor classification and segmentation across 19 international sites. FL-PedBrain exhibits less than a 1.5% decrease in classification and a 3% reduction in segmentation performance compared to centralized data training. FL boosts segmentation performance by 20 to 30% on three external, out-of-network sites. Finally, we explore the sources of data heterogeneity and examine FL robustness in real-world scenarios with data imbalances. Federated learning (FL) has emerged as a potential solution to train machine learning models in multiple clinical datasets while preserving patient privacy. Here, the authors develop an MRI-based FL platform for pediatric posterior fossa brain tumors—FL-PedBrain—and evaluate it on a diverse multi-center cohort.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.007
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.002
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.147
GPT teacher head0.503
Teacher spread0.356 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations36
Published2024
Admission routes2
Has abstractyes

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