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Record W4402374294 · doi:10.1136/jnnp-2024-ehdn.35

A035 Identification of neurodevelopmental organization of the ChP cell population and TTR in HD fused organoids

2024· article· en· W4402374294 on OpenAlexaff
Karolina Świtońska-Kurkowska, Jakub Kubiś, Joanna Delimata-Raczek, Bart Krist, Magdalena Surdyka, Żaneta Kalinowska-Pośka, Piotr Piasecki, Luiza Handschuh, Jan Podkowiński, Anna Samelak-Czajka, Magdalena Rakoczy, Michael R. Hayden, Nicholas S. Caron, Maciej Figiel

Bibliographic record

Venuenot available
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicATP Synthase and ATPases Research
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsIdentification (biology)OrganoidPopulationComputational biologyNeuroscienceBiologyMedicineEnvironmental healthEcology

Abstract

fetched live from OpenAlex

<h3></h3> The impact of Huntington’s Disease (HD) on neurodevelopment is still not fully elucidated. Our latest study demonstrates a new fused dorso-ventral forebrain organoid model of HD for providing new insights into the altered cellular organization of brain structures in HD neurodevelopment. The dorso-ventral organoids from juvenile HD or control iPSC mimick cortex and striatum brain regions affected in HD. HD organoids grew significantly larger than the control and showed more NSC rosettes and specific gene expression profiles, indicating a commitment to proliferation over differentiation. We demonstrate that a molecular marker TTR is highly upregulated as early as brain dorso-ventral organoids and embryonic brains of the Hu128/21 HD mouse model. By scRNAseq, we found that both HD models also show upregulation of a specific choroid plexus (ChP) cell population, which hardly occurs in control 60-day organoids and control embryos. Increased TTR expression in human HD organoids and mosaic organoids, HD mouse embryos, and the HD mouse blood serum underscores TTR’s potential significance in HD pathogenesis. ChP population early growth and the indication that early TTR biomarkers can be identified in blood serum may enable very early detection and monitoring of HD. Our results connecting the TTR marker and ChP structure brain and its increased cellular population in organoids and embryos may ultimately lead to developing novel and more effective HD therapies that target the ChP.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.126
Threshold uncertainty score0.129

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.242
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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