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Record W4402452090 · doi:10.5376/jtsr.2024.14.0008

Unlocking the Tea Genome: Advances in High-Quality Sequencing and Annotation

2024· article· en· W4402452090 on OpenAlexvenueno aff
Xi Chen, Yichen Zhao

Bibliographic record

VenueJournal of Tea Science Research · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Pathogens and Fungal Diseases
Canadian institutionsnot available
FundersGuizhou Academy of Agricultural SciencesNational Natural Science Foundation of China
KeywordsAnnotationComputational biologyDNA sequencingBiologyGenomeGenome projectQuality (philosophy)Computer scienceGeneticsDNAGene

Abstract

fetched live from OpenAlex

This study explores the latest advancements in high-quality sequencing and annotation of the tea plant genome, revealing its genetic diversity, regulatory mechanisms, and biotechnological applications.Through comprehensive genomic analysis, significant discoveries have been made, including the assembly of the complex tea plant genome, key genes regulating the synthesis of bioactive compounds (such as catechins and caffeine), and epigenetic regulatory mechanisms influencing tea plant phenotypes and environmental adaptability.Comparative genomics studies have elucidated the relationships between tea cultivars and their wild relatives, enhancing the understanding of genetic variation and adaptive traits.These findings highlight the potential of tea genomics in precision breeding, which can be used to develop climate-resistant cultivars, improve tea quality, and diversify market products.The advancements in high-quality sequencing and annotation of the tea plant genome have significantly improved our understanding of the genetic and metabolic bases of tea quality.These discoveries provide valuable resources for future research and breeding programs aimed at improving tea plant varieties and expanding the diversity of tea flavors.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.007
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.006
Threshold uncertainty score0.033

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.007
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.002
Bibliometrics0.0030.004
Science and technology studies0.0010.001
Scholarly communication0.0040.004
Open science0.0020.003
Research integrity0.0020.004
Insufficient payload (model declined to judge)0.0020.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.056
GPT teacher head0.417
Teacher spread0.361 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

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