478 Impact of crude protein and phosphorus deficiencies on liver mitochondrial content and transcriptome in growing Merino wethers
Bibliographic record
Abstract
Abstract In grazing systems in Northern Australia, crude protein (CP) and phosphorus (P) availability varies, affecting ruminant production due to voluntary reduced intake and therefore body weight (BW) gain. We were interested in understanding metabolic regulation in this model system, both in terms of a) identifying key tissues, and b) detecting any modifications in mitochondrial physiology, given the central role of this organelle in bioenergetic homeostasis. Merino wethers (n = 24) were subjected to three dietary regimens: High CP, High P, (Control), Low CP, Low P (Deficient), and High CP, High P, with restricted feed intake (Restricted). Mitochondrial DNA (mtDNA) copy numbers, indicative of mitochondrial content, were measured via qPCR. Transcriptomic analyses through RNA sequencing targeted mitochondria-associated gene expression changes and pathways, using the MitoCarta 3.0 database. There was a significant decrease of mtDNA copy numbers in the liver of sheep under either Deficient and Restricted diets (P < 0.01), with as much as a 2-fold difference between the Control and Deficient diets. This may suggest reduced mitochondrial biogenesis as an adaptation to decreased energy intake. When compared with the Control group, both the Deficient and Restricted groups upregulated pathways related to vitamin metabolism (Log2FC: 0.231 and 0.449) and folate and 1-C metabolism (Log2FC: 0.409 and 0.706). However, impacted pathways shared between these two comparisons (Control v Deficient, Control v Restricted) also include choline and betaine metabolism, amino acid metabolism, and glycine metabolism, which suggests similar mechanisms being impacted by decreased energy intake, regardless of whether it is due to satiety from nutrient deficiency or restricted feed intake. Notably, the creatine metabolism pathway was uniquely upregulated in the Restricted group compared with the Deficient group (Log2FC: 0.114), although the CKMT2 gene was upregulated in the Restricted group compared with both the Control and Deficient group (Log2FC: 1.30 and 0.879). Additionally, the SLC25A family pathway, responsible for mitochondrial metabolite transport, was found to be upregulated in the Restricted group when compared with both Control and Deficient groups (Log2FC: 0.33 and 0.865). Overall, this study demonstrated a pronounced decrease in mitochondrial content in the liver of growing Merino wethers subjected to nutritional deficiencies and feed restriction. Multiple metabolic pathways were shared between the comparisons of the Control diet group to both Deficient and Restricted nutritional treatments. However, the SLC25A transporter family pathway was uniquely upregulated in the Restricted group compared with either an optimal or deficient diet. The regulation of these metabolic pathways is a subject of further study that may represent a systemic response to maintain homeostasis while undergoing significantly lower energy intake, with implications for animal growth, tissue deposition, and energetic maintenance. Understanding distinctions in the response to feed restriction and nutrient deficiency induced reduction in intake may help improve production strategies for ruminants grazing in these conditions.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.000 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.000 |
| Science and technology studies | 0.000 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.000 | 0.000 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.001 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".