MétaCan
Menu
Back to cohort
Record W4402542683 · doi:10.60087/jklst.v3.n4.p108

Advancements in sequencing technologies:

2024· article· en· W4402542683 on OpenAlexaff
Iftakhar Kazim, Tanvi Gande, Elinor Reyher, Kelsang Gyatsho Bhutia, Karan Dhingra, Saloni Verma

Bibliographic record

VenueJournal of Knowledge Learning and Science Technology ISSN 2959-6386 (online) · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicSingle-cell and spatial transcriptomics
Canadian institutionsUniversity of Ottawa
Fundersnot available
KeywordsComputational biologyComputer scienceBiology

Abstract

fetched live from OpenAlex

Single-cell Sequencing (SCS) technologies, methods for analyzing genetic material at the single-cell level, offer extensive insights into cellular heterogeneity. This has broadened oncology research by enabling the exploration of functional and genetic diversity within tissues of different cell types. Furthermore, SCS facilitates the study of complex biological processes like metastasis tracking and tumor microenvironment analysis. However, the implementation of SCS methods is furrowed by a lack of clinical accessibility and high application costs. This review examines the development of SCS technologies, analyzing trends in throughput, accessibility, and cost of various commercial platforms, by focusing on the domain of cancer research and precision medicine. Despite the significant advancements offered by third-generation sequencing platforms, which provide high accuracy, versatility, and throughput for sequencing single-cell genetic information, these methods face challenges such as high error rates, insufficient funding, and complex data analysis. Furthermore, we’ve determined that the advancements of the previous decade have enabled personalized medicine and in-depth analysis of cellular heterogeneity, revolutionizing fields like medicine, biotechnology, and biological research. We anticipate our assay indicating extensive advancements in healthcare through the adoption of precision medicine concerning individual genomes and helping to demonstrate the promise of advancement in general understandings of complex biological systems. Furthermore, our research indicates that efforts to overcome technical, analytical, and cost-related challenges are essential in future clinical application, distribution, and growth of SCS methods.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.389
Threshold uncertainty score0.633

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.002
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.305
Teacher spread0.288 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2024
Admission routes1
Has abstractyes

Explore more

Same venueJournal of Knowledge Learning and Science Technology ISSN 2959-6386 (online)Same topicSingle-cell and spatial transcriptomicsFrench-language works237,207