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Record W4402632290 · doi:10.1101/2024.09.13.612884

AvianLexiconAtlas: A database of descriptive categories of English-language bird names around the world

2024· preprint· en· W4402632290 on OpenAlexaff
Erin S. Morrison, Guinevere P. Pandolfi, Stepfanie M. Aguillon, Jarome R. Ali, Olivia Archard, Daniel T. Baldassarre, Illeana Baquero, Kevin F. P. Bennett, Kevin M. Bonney, Riley Bryant, Rosanne M. Catanach, Therese A. Catanach, Ida Chavoshan, Sarah N. Davis, Brooke D. Goodman, Eric R. Gulson‐Castillo, Matthew D. Hack, Jocelyn Hudon, Gavin M. Leighton, Kira M. Long, Ziqi Ma, Dakota E. McCoy, Jessica F. McLaughlin, Gaia Rueda Moreno, Talia M. Mota, Lara Noguchi, Ugo Nwigwe, Teresa M. Pegan, Kaiya L. Provost, Shauna A. Rasband, Jessie F. Salter, Lauren C. Silvernail, Jared A. Simard, Heather R. Skeen, Juliana Soto‐Patiño, Young Ha Suh, Q. Wang, Matthew E. Warshauer, Sissy Yan, Betsy Zalinski, Ziqi Zhao, Allison J. Shultz

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAnimal Vocal Communication and Behavior
Canadian institutionsRoyal Alberta Museum
FundersNature
KeywordsCrowdsourcingComputer scienceWorld Wide Web

Abstract

fetched live from OpenAlex

Abstract Common names of species are important for communicating with the general public. In principle, these names should provide an accessible way to engage with and identify species. The common names of species have historically been labile without standard guidelines, even within a language. Currently, there is no systematic assessment of how often common names communicate identifiable and biologically relevant characteristics about species. This is a salient issue in ornithology, where common names are used more often than scientific names for species of birds in written and spoken English, even by professional researchers. To gain a better understanding of the types of terminology used in the English-language common names of bird species, a group of 85 professional ornithologists and non-professional contributors classified unique descriptors in the common names of all recognized species of birds. In the AvianLexiconAtlas database produced by this work, each species’ common name is assigned to one of ten categories associated with aspects of avian biology, ecology, or human culture. Across 10,906 species of birds, 89% have names describing the biology of the species, while the remaining 11% of species have names derived from human cultural references, human names, or local non-English languages. Species with common names based on features of avian biology are more likely to be related to each other or be from the same geographic region. The crowdsourced data collection also revealed that many common names contain specialized or historic terminology unknown to many of the data collectors, and we include these terms in a glossary and gazetteer alongside the dataset. The AvianLexiconAtlas can be used as a quantitative resource to assess the state of terminology in English-language common names of birds. Future research using the database can shed light on historical approaches to nomenclature and how people engage with species through their names.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.015
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.024
Threshold uncertainty score0.078

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0020.015
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0240.023
Science and technology studies0.0010.001
Scholarly communication0.0030.005
Open science0.0020.004
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0230.024

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.258
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

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