MétaCan
Menu
← Back to cohort
Record W4402664594 · doi:10.1038/s41467-024-52298-2

CYP1B1-RMDN2 Alzheimer’s disease endophenotype locus identified for cerebral tau PET

2024· article· en· W4402664594 on OpenAlexfundno aff
Kwangsik Nho, Shannon L. Risacher, Liana G. Apostolova, Paula J. Bice, Jared R. Brosch, Rachael Deardorff, Kelley Faber, Martin R. Farlow, Tatiana Foroud, Sujuan Gao, Thea Rosewood, Jun Pyo Kim, Kelly Nudelman, Meichen Yu, Paul Aisen, Reisa A. Sperling, Basavaraj Hooli, Sergey Shcherbinin, Diana Otero Svaldi, Clifford R. Jack, William J. Jagust, Susan Landau, Aparna Vasanthakumar, Jeffrey F. Waring, Vincent Doré, Simon M. Laws, Colin L. Masters, Tenielle Porter, Christopher C. Rowe, Victor L. Villemagne, Logan Dumitrescu, Timothy J. Hohman, Julia B. Libby, Elizabeth C. Mormino, Rachel F. Buckley, Keith A. Johnson, Hyun‐Sik Yang, Ronald C. Petersen, Vijay K. Ramanan, Nilüfer Ertekin‐Taner, Prashanthi Vemuri, Ann D. Cohen, Kang-Hsien Fan, M. Ilyas Kamboh, Oscar L. López, David A. Bennett, Muhammad Ali, Tammie L.S. Benzinger, Carlos Cruchaga, Diana A. Hobbs, Philip L. De Jager, Masashi Fujita, Vaishnavi Jadhav, Bruce T. Lamb, Andy P. Tsai, Isabel Castanho, Jonathan Mill, Michael W. Weiner

Bibliographic record

VenueNature Communications · 2024
Typearticle
Languageen
FieldMedicine
TopicAlzheimer's disease research and treatments
Canadian institutionsnot available
FundersLawrence Berkeley National LaboratoryNational Center for Research ResourcesNational Institute on AgingCanadian Institutes of Health ResearchGenentechNational Institutes of HealthNational Institute of General Medical SciencesH. Lundbeck A/SEisaiGHR FoundationChan Zuckerberg InitiativeNorthern California Institute for Research and EducationRush UniversityServierSchuler-StiftungCurePSPU.S. National Library of MedicineNational Institute of Neurological Disorders and StrokeIXICOUniversity of PittsburghPfizerBiogenBioClinicaMayo Foundation for Medical Education and ResearchElsie and Marvin Dekelboum Family FoundationHope Center for Neurological DisordersWellcome TrustUniversity of Southern CaliforniaMayo ClinicU.S. Department of DefenseEli Lilly and CompanyBristol-Myers SquibbAlzheimer's AssociationNovartis Pharmaceuticals CorporationU.S. Department of Health and Human ServicesAvid RadiopharmaceuticalsArizona Department of Health ServicesMichael J. Fox Foundation for Parkinson's ResearchArizona Biomedical Research CommissionFoundation for the National Institutes of HealthAlzheimer's Disease Neuroimaging InitiativeNational Center for Advancing Translational SciencesMedical Research CouncilMeso Scale Diagnostics
KeywordsEndophenotypeNeuroscienceAmyloid betaAlzheimer's diseaseGenetic architectureTau proteinPositron emission tomographyGenome-wide association studyDiseasePsychologyLocus (genetics)BiologyMedicineBioinformaticsGeneticsCognitionGeneInternal medicineQuantitative trait locusGenotype

Abstract

fetched live from OpenAlex

Determining the genetic architecture of Alzheimer's disease pathologies can enhance mechanistic understanding and inform precision medicine strategies. Here, we perform a genome-wide association study of cortical tau quantified by positron emission tomography in 3046 participants from 12 independent studies. The CYP1B1-RMDN2 locus is associated with tau deposition. The most significant signal is at rs2113389, explaining 4.3% of the variation in cortical tau, while APOE4 rs429358 accounts for 3.6%. rs2113389 is associated with higher tau and faster cognitive decline. Additive effects, but no interactions, are observed between rs2113389 and diagnosis, APOE4, and amyloid beta positivity. CYP1B1 expression is upregulated in AD. rs2113389 is associated with higher CYP1B1 expression and methylation levels. Mouse model studies provide additional functional evidence for a relationship between CYP1B1 and tau deposition but not amyloid beta. These results provide insight into the genetic basis of cerebral tau deposition and support novel pathways for therapeutic development in AD.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.004
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.054
GPT teacher head0.388
Teacher spread0.333 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations11
Published2024
Admission routes1
Has abstractyes

Explore more

Same venueNature Communications→Same topicAlzheimer's disease research and treatments→French-language works237,207→