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Record W4402833817 · doi:10.1080/00268976.2024.2407538

Computational investigation of hydrazone derivatives as potential COVID-19 receptor inhibitors: DFT analysis, molecular docking, dynamics simulations, topological indices and ADMET profiling

2024· article· en· W4402833817 on OpenAlexaff
S. Sonadevi, D. Rajaraman, M. Saritha, A. Dhandapani, Peter Solo, Tony Augustine, Jain Maria Thomas, L. Athishu Anthony

Bibliographic record

VenueMolecular Physics · 2024
Typearticle
Languageen
FieldChemistry
TopicSynthesis and biological activity
Canadian institutionsSt. Peter's Hospital
Fundersnot available
KeywordsMolecular dynamicsDocking (animal)Coronavirus disease 2019 (COVID-19)Profiling (computer programming)Computational chemistryChemistryComputational biologySevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)BiologyComputer scienceMedicineInfectious disease (medical specialty)

Abstract

fetched live from OpenAlex

A molecule (E)-N′-((E)-2-(2-(furan-3-carbonyl)hydrazono)-1,2-diphenylethylidene) furan-2-carbohydrazide (DPFC) plays a significant role in the treatment of SARS-CoV-2. The current study investigated the molecular structure of the titled compound through a DFT method. The geometric parameters obtained theoretically closely match experimental findings. Various calculations were conducted, including dipole moment, polarizability, hyperpolarizability (NLO), occupied and unoccupied molecular orbitals (HOMO-LUMO), charge localisation and delocalisation (NBO), molecular stability, and the chemical activity region (MEP) of the molecule. The interaction between the DPFC ligand and COVID-19 receptors (6WCF/6Y84/6LU7) was investigated through molecular docking to elucidate the binding modes of this compound at the active sites. Molecular dynamics simulation was employed on the COVID-19 main protease (Mpro: 6WCF/6Y84/6LU7) to discern the factors influencing the inhibitory effect and the stability of interaction under dynamic conditions. Molecular descriptors play a significant role in molecular structural analysis by investigating quantitative structure-activity relationships (QSARs) and quantitative structure-property relationships (QSPRs).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.170
Threshold uncertainty score0.704

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.280
Teacher spread0.266 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2024
Admission routes1
Has abstractyes

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