MétaCan
Menu
← Back to cohort
Record W4402883580 · doi:10.1101/2024.09.24.24314067

Severe infection among young infants in Dhaka, Bangladesh: effect of case definition on incidence estimates

2024· preprint· en· W4402883580 on OpenAlexaff
Alastair Fung, Cole Heasley, Lisa G. Pell, Diego G. Bassani, Prakesh S Shah, Shaun K. Morris, Davidson H. Hamer, Mohammad Shahidul Islam, Abdullah Al Mahmud, Eleanor Pullenayegum, Samir K. Saha, Rashidul Haque, Md Iqbal Hossain, Chun-Yuan Chen, Abby Emdin, Karen M O’Callaghan, Miranda G. Loutet, Shamima Sultana, S M Masum Billah, S. M. Abdul Gaffar, Enamul Karim, Sharika Sayed, Sultana Yeasmin, Md. Mahbubul Hoque, Tahmeed Ahmed, Shafiqul Alam Sarker, Daniel Roth

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldMathematics
TopicCOVID-19 epidemiological studies
Canadian institutionsMount Sinai HospitalInstitute for Clinical Evaluative SciencesUniversity of TorontoSickKids FoundationHospital for Sick ChildrenPublic Health Ontario
Fundersnot available
KeywordsIncidence (geometry)PediatricsMedicineDemographyMathematicsSociology

Abstract

fetched live from OpenAlex

ABSTRACT Introduction Heterogeneity in definitions of severe infection, sepsis and serious bacterial infection (SBI) in young infants limits the comparability of randomized controlled trials (RCTs) of infection prevention interventions. To inform the design of severe infection prevention RCTs for young infants in low-resource settings, we estimated the incidence of severe infection in an observational cohort of Bangladeshi infants aged 0-60 days and examined the effect of variations in case definitions on incidence estimates. Methods In 2020-2022, 1939 infants born generally healthy were enrolled at two hospitals in Dhaka, Bangladesh. Severe infection cases were identified through up to 12 scheduled community health worker home visits from 0-60 days of age or through caregiver self-referral. The primary severe infection case definition combined physician documentation of standardized clinical signs and/or diagnosis of sepsis/SBI, plus either a positive blood culture or parenteral antibiotic treatment for ≥5 days. Incidence rates were estimated for the primary severe infection definition, the World Health Organization (WHO) definition of possible SBI, blood culture-confirmed infection, and five alternative severe infection definitions. Results Severe infection incidence per 1000 infant-days was 1.2 (95% CI 0.97-1.4) using the primary definition, 0.84 (0.69-1.0) using the WHO definition of possible SBI, and 0.026 (0.0085-0.081) using blood culture-confirmed infection. One-third of cases met criteria for the primary severe infection definition through physician diagnosis of sepsis/SBI rather than the standardized clinical signs, and 85% of cases were identified following caregiver self-referral despite frequent scheduled study visits. Conclusions Severe infection incidence in young infants varied considerably by case definition. A severe infection definition that requires physician documentation of standardized clinical signs may miss a substantial proportion of cases identified by physician diagnosis of sepsis/SBI. In settings where health facilities are accessible, frequently scheduled home assessments by study personnel to identify severe infection in infants may not be necessary. What is already known on this topic Researchers aiming to design a randomized controlled trial (RCT) for severe infection prevention or treatment in young infants require a clinically precise and feasible case definition of severe infection. A previous systematic review of neonatal sepsis definitions used in RCTs identified a diverse range, including culture-confirmed sepsis, a combination of clinical signs and culture-confirmation, and a combination of clinical signs and laboratory investigation results. Incidence estimates of various severe infection case definitions that can be operationalized in low- and middle-income countries (LMICs) are needed to determine the feasibility of using these definitions in severe infection prevention and treatment RCTs for young infants in these settings. What this study adds We provide incidence estimates of severe infection in young infants born generally healthy in Dhaka, Bangladesh, during the first 60 days of age using case definitions based on different combinations of clinical signs, antibiotic treatment and microbiologic criteria. We demonstrate that the incidence estimates of severe infection in young infants vary considerably depending on whether a permissive or stringent case definition is adopted. We also demonstrate that in this study, most severe infection cases were identified following caregiver self-referral rather than during scheduled home assessments by study personnel. How this study might affect research, practice or policy Our findings may inform the design of future severe infection prevention RCTs in young infants in LMICs by 1) providing incidence estimates of various candidate case definitions, and 2) supporting the planning of optimal outcome surveillance systems that balance the identification of severe infection cases with operational costs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.120
metaresearch head score (Gemma)0.333
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.120
Threshold uncertainty score0.633

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1200.333
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0030.006
Bibliometrics0.0030.004
Science and technology studies0.0000.001
Scholarly communication0.0030.002
Open science0.0030.003
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.127
GPT teacher head0.396
Teacher spread0.269 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

Explore more

Same venuemedRxiv→Same topicCOVID-19 epidemiological studies→French-language works237,207→