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Record W4402905715 · doi:10.1139/cjb-2024-0022

Phenological growth stages according to the BBCH-scale as a powerful tool for differentiating among CRISPR/Cas9 mutated lineages of the model plant <i>Setaria viridis</i> (L.) P. Beauv. (Poaceae)

2024· article· en· W4402905715 on OpenAlex

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueBotany · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicEcology and Conservation Studies
Canadian institutionsnot available
Fundersnot available
KeywordsBiologySetaria viridisPoaceaeBotanyPhenologySetariaWeed

Abstract

fetched live from OpenAlex

In recent years, Setaria viridis (L.) P. Beauv. has increased its popularity as a model plant for genetic studies with C 4 monocotyledons. The BBCH-scale comprises a detailed phenotypic analysis, based on predefined growth stages, allowing for the construction of a comprehensive tool for morphological studies. We constructed a BBCH-scale for the ME034V wild-type accession and compared it with two independent mutants of the LONESOME HIGHWAY (LWH), which did not have noticeable morphological phenotypes. Our analysis showed that the main growth stages (0, 1, 2, and 7) showed homogeneity between the wild accession and the mutants. However, developmental changes between accessions were observable by comparing the secondaries of these main stages. There were significant differences between the wild accession and the mutants in relation to the main stages 4, 5, and 9. The total life cycle was reduced by 5 days in the svlhw-1 mutant. With a short life cycle like Setaria viridis, the observed changes can probably be attributed to genetic factors since the environmental conditions were strictly controlled. Thus, we showed that the BBCH-scale offers a powerful system to discriminate between Setaria viridis mutants that would otherwise be indistinguishable.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.419
Threshold uncertainty score0.386

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.020
GPT teacher head0.237
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it