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Record W4402956201 · doi:10.5376/bm.2024.15.0019

Unraveling the Functional Role of R2R3-MYB Genes in Black Rice Anthocyanin Pathway: A CRISPR/Cas9 and Overexpression Study

2024· article· en· W4402956201 on OpenAlex
Mengmeng Yin, Fan Luo, Xiaoli Zhou, Changhe Wei, Qian Zhu, Huirong Dong, Lijuan Chen, Dong Sun Lee

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueBioscience Methods · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant Gene Expression Analysis
Canadian institutionsnot available
Fundersnot available
KeywordsCRISPRMYBBlack riceGeneAnthocyaninBiologyGeneticsTranscription factorBotanyEcology

Abstract

fetched live from OpenAlex

R2R3-OsMYBs play a pivotal role in the regulation of anthocyanin biosynthesis, which is responsible for the black pigmentation observed in rice. This paper is aimed to overview the functional mechanisms of these genes through the application of CRISPR/Cas9 gene editing and overexpression techniques. Recent studies have demonstrated the effectiveness of CRISPR/Cas9 in targeting key genes within the anthocyanin biosynthesis pathway, including OsF3'H , OsDFR , and OsLDOX , leading to significant alterations in anthocyanin content and seed color in rice. Moreover, the overexpression of R2R3-MYB  genes, such as OsC1 , has been demonstrated to increase anthocyanin production and enhance oxidative stress tolerance in rice. Comparative studies in other plant species, including tomato and Nitraria sibirica , have further illuminated the diverse regulatory roles of R2R3-MYB TFs in anthocyanin biosynthesis. This review summarizes current findings to provide a comprehensive understanding of the genetic and molecular basis of anthocyanin regulation in black rice, offering insights into potential applications for crop improvement and functional food development.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.022
Threshold uncertainty score0.353

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.350
Teacher spread0.324 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it