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Record W4403164364 · doi:10.1101/2024.10.04.24314535

Genetic Risk of Axonal Neuropathy Following Infection

2024· preprint· en· W4403164364 on OpenAlexaff
J. Robert Harkness, John McDermott, Shea Marsden, Peter Jamieson, Kay Metcalfe, Naz Khan, William L. Macken, Robert D. S. Pitceathly, Christopher J. Record, Reza Maroofian, Kloepa Kloepas, Ataf Sabir, Lily Islam, Saikat Santra, Enise Avcı Durmuşalioğlu, Tahir Atık, Esra Işık, Özgür Çoğulu, Jill Urquhart, Glenda M. Beaman, Leigh Demain, Adam Jackson, Alexander J. M. Blakes, Hayley Bennett, Wei‐Hsiang Lin, Antony Adamson, Sanjai Patel, Wyatt W. Yue, Robert W. Taylor, Janine Reunert, Thorsten Marquardt, Rebecca Buchert, Tobias B. Haack, Heike Losch, Lukáš Ryba, Petra Laššuthová, Radka Valkovičová, Jana Haberlová, Barbora Lauerová, Eva Trúsiková, Kiran Polavarapu, Ozge Aksel Kilicarslan, Hanns Lochmüller, Mina Zamani, Niloofar Chamanrou, Gholamreza Shariati, Saeid Sadeghian, Reza Azizi Malamiri, Sateesh Maddirevula, Mohammed A. AlMuhaizea, Fowzan S. Alkuraya, Rita Horváth, Serdal Güngör, Emma Wakeling, Adnan Manzur, Pinki Munot, Rachael Matthews, Siddharth Banka, Mary M. Reilly, Daimark Bennett, Raymond T. O’Keefe, William G. Newman

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldNeuroscience
TopicHereditary Neurological Disorders
Canadian institutionsChildren's Hospital of Eastern Ontario
FundersNational Institute for Health and Care Research
KeywordsMedicineNeuroscienceBiology

Abstract

fetched live from OpenAlex

Abstract Background Why some individuals experience severe neuropathy following infection is unknown. Nucleocytoplasmic trafficking (NCT) is an essential process in nucleated cells, and its disruption has been implicated in many neurodegenerative conditions including amyotrophic lateral sclerosis (ALS) and frontotemporal dementia. Methods We performed genomic and clinical studies in 24 individuals from 12 families with acute onset axonal neuropathy. Genetic variants were characterized by thermal stability and enzymatic assays using recombinantly expressed protein. Protein localization was determined in patient fibroblasts using immunofluorescence following heat or oxidative stress. A humanized Drosophila model was generated to determine the effect of stress on in vivo function. Results We identified deleterious biallelic variants in human RCC1 , encoding a GTP exchange factor essential in maintaining Ran GTPase-dependent NCT function. Clinical presentations ranged from a rapidly progressive, fatal axonal neuropathy with encephalopathy to a mild motor neuropathy resulting in impaired walking. In most patients (n=22/24), neurological presentation was secondary to infection, resulting in prior diagnosis of Guillain-Barré syndrome (GBS) in 13. The efficiency of cellular Ran GDP-GTP exchange and the thermal stability of Rcc1 protein was reduced by disease-associated variants. Heat shock or oxidative stress revealed defects in Ran nuclear localization, impaired NCT, and TDP-43 mislocalization in patient fibroblasts. Disease associated variants were unable to rescue the thermosensitive phenotype of a rcc1 deficient hamster cell line. RCC1 Drosophila models revealed a fatal intolerance to oxidative stress. Conclusion We describe a novel autosomal recessive acute onset axonal neuropathy triggered by infection caused by biallelic RCC1 variants, which mimics GBS and has important mechanistic overlap with ALS.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.003
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.287
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.003
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.002
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.032
GPT teacher head0.268
Teacher spread0.236 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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