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Record W4403402517 · doi:10.7717/peerj.18229

World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens

2024· article· en· W4403402517 on OpenAlexaff
Mihaela C. Ion, Caitlin C. Bloomer, Tudor I. Bărăscu, Francisco J. Oficialdegui, Nathaniel F. Shoobs, Bronwyn W. Williams, Kevin Scheers, Miguel Clavero, Frédéric Grandjean, Marc Collas, Thomas Baudry, Zachary J. Loughman, Jeremy J. Wright, Timo J. Ruokonen, Christoph Chucholl, Simone Guareschi, Bram Koese, Zsombor Bányai, James Hodson, Margo Hurt, Katrin Kaldre, Boris Lipták, James W. Fetzner, Tommaso Cancellario, András Weiperth, Jānis Birzaks, Teodora Trichkova, Milcho Todorov, Maksims Balalaikins, Bogna Griffin, О. Н. Петко, Ada Acevedo, Guillermo D’Elía, Karolina Śliwińska, Anatoly Alekhnovich, Henry Choong, Josie South, Nick S. Whiterod, Katarina Zorić, Peter Haase, Ismael Soto, Daniel J. Brady, Phillip J. Haubrock, Pedro J. Torres, Denis Şadrin, Pavel Vlach, Çüneyt Kaya, Sang Woo Jung, Jin‐Young Kim, Xavier Vermeersch, Maciej Bonk, Radu Cornel Guiașu, Muzaffer Mustafa Harlıoğlu, Jane Devlin, Irmak Kurtul, Dagmara Błońska, Pieter Boets, Hossein Masigol, Paul R. Cabe, Japo Jussila, Trude Vrålstad, David Beresford, Scott M. Reid, Jiří Patoka, David Strand, Ali Serhan Tarkan, Frédérique Steen, Thomas Abeel, Matthew Harwood, Samuel Auer, Sandor L. Kelly, Ioannis A. Giantsis, Rafał Maciaszek, Maria V. Alvanou, Önder Aksu, David M. Hayes, Tadashi Kawai, Elena Tricarico, Adroit T. Chakandinakira, Zanethia C. Barnett, Ştefan G. Kudor, Andreea E. Beda, Lucian Vîlcea, Alexandru Eugeniu Mizeranschi, Marian Neagul, Anton Licz, Andra D. Cotoarbă, Adam Petrusek, Antonín Kouba, Christopher A. Taylor, Lucian Pârvulescu

Bibliographic record

VenuePeerJ · 2024
Typearticle
Languageen
FieldEnvironmental Science
TopicCrustacean biology and ecology
Canadian institutionsTrent UniversityYork UniversityMinistry of Natural Resources and ForestryRoyal British Columbia Museum
FundersColegiul Consultativ pentru Cercetare-Dezvoltare şi InovareUnitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si InovariiMinisterul Cercetării, Inovării şi Digitalizării
KeywordsCrayfishBiologyEcologyFisheryZoologyData scienceGeographyComputer science

Abstract

fetched live from OpenAlex

Freshwater crayfish are amongst the largest macroinvertebrates and play a keystone role in the ecosystems they occupy. Understanding the global distribution of these animals is often hindered due to a paucity of distributional data. Additionally, non-native crayfish introductions are becoming more frequent, which can cause severe environmental and economic impacts. Management decisions related to crayfish and their habitats require accurate, up-to-date distribution data and mapping tools. Such data are currently patchily distributed with limited accessibility and are rarely up-to-date. To address these challenges, we developed a versatile e-portal to host distributional data of freshwater crayfish and their pathogens (using Aphanomyces astaci, the causative agent of the crayfish plague, as the most prominent example). Populated with expert data and operating in near real-time, World of Crayfish™ is a living, publicly available database providing worldwide distributional data sourced by experts in the field. The database offers open access to the data through specialized standard geospatial services (Web Map Service, Web Feature Service) enabling users to view, embed, and download customizable outputs for various applications. The platform is designed to support technical enhancements in the future, with the potential to eventually incorporate various additional features. This tool serves as a step forward towards a modern era of conservation planning and management of freshwater biodiversity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Software · Consensus signal: Software
Teacher disagreement score0.016
Threshold uncertainty score0.053

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0030.006
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0060.003
Science and technology studies0.0010.000
Scholarly communication0.0030.004
Open science0.0020.005
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0160.015

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.226
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreSoftware

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations30
Published2024
Admission routes1
Has abstractyes

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