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Record W4403402517 · doi:10.7717/peerj.18229

World of Crayfish™: a web platform towards real-time global mapping of freshwater crayfish and their pathogens

2024· article· en· W4403402517 on OpenAlexaff
Mihaela C. Ion, Caitlin C. Bloomer, Tudor I. Bărăscu, Francisco J. Oficialdegui, Nathaniel F. Shoobs, Bronwyn W. Williams, Kevin Scheers, Miguel Clavero, Frédéric Grandjean, Marc Collas, Thomas Baudry, Zachary J. Loughman, Jeremy J. Wright, Timo J. Ruokonen, Christoph Chucholl, Simone Guareschi, Bram Koese, Zsombor Bányai, James Hodson, Margo Hurt, Katrin Kaldre, Boris Lipták, James W. Fetzner, Tommaso Cancellario, András Weiperth, Jānis Birzaks, Teodora Trichkova, Milcho Todorov, Maksims Balalaikins, Bogna Griffin, О. Н. Петко, Ada Acevedo, Guillermo D’Elía, Karolina Śliwińska, Anatoly Alekhnovich, Henry Choong, Josie South, Nick S. Whiterod, Katarina Zorić, Peter Haase, Ismael Soto, Daniel J. Brady, Phillip J. Haubrock, Pedro J. Torres, Denis Şadrin, Pavel Vlach, Çüneyt Kaya, Sang Woo Jung, Jin‐Young Kim, Xavier Vermeersch, Maciej Bonk, Radu Cornel Guiașu, Muzaffer Mustafa Harlıoğlu, Jane Devlin, Irmak Kurtul, Dagmara Błońska, Pieter Boets, Hossein Masigol, Paul R. Cabe, Japo Jussila, Trude Vrålstad, David Beresford, Scott M. Reid, Jiří Patoka, David Strand, Ali Serhan Tarkan, Frédérique Steen, Thomas Abeel, Matthew Harwood, Samuel Auer, Sandor L. Kelly, Ioannis A. Giantsis, Rafał Maciaszek, Maria V. Alvanou, Önder Aksu, David M. Hayes, Tadashi Kawai, Elena Tricarico, Adroit T. Chakandinakira, Zanethia C. Barnett, Ştefan G. Kudor, Andreea E. Beda, Lucian Vîlcea, Alexandru Eugeniu Mizeranschi, Marian Neagul, Anton Licz, Andra D. Cotoarbă, Adam Petrusek, Antonín Kouba, Christopher A. Taylor, Lucian Pârvulescu

Bibliographic record

VenuePeerJ · 2024
Typearticle
Languageen
FieldEnvironmental Science
TopicCrustacean biology and ecology
Canadian institutionsTrent UniversityYork UniversityMinistry of Natural Resources and ForestryRoyal British Columbia Museum
FundersColegiul Consultativ pentru Cercetare-Dezvoltare şi InovareUnitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si InovariiMinisterul Cercetării, Inovării şi Digitalizării
KeywordsCrayfishBiologyEcologyFisheryZoologyData scienceGeographyComputer science

Abstract

fetched live from OpenAlex

Freshwater crayfish are amongst the largest macroinvertebrates and play a keystone role in the ecosystems they occupy. Understanding the global distribution of these animals is often hindered due to a paucity of distributional data. Additionally, non-native crayfish introductions are becoming more frequent, which can cause severe environmental and economic impacts. Management decisions related to crayfish and their habitats require accurate, up-to-date distribution data and mapping tools. Such data are currently patchily distributed with limited accessibility and are rarely up-to-date. To address these challenges, we developed a versatile e -portal to host distributional data of freshwater crayfish and their pathogens (using Aphanomyces astaci , the causative agent of the crayfish plague, as the most prominent example). Populated with expert data and operating in near real-time, World of Crayfish ™ is a living, publicly available database providing worldwide distributional data sourced by experts in the field. The database offers open access to the data through specialized standard geospatial services (Web Map Service, Web Feature Service) enabling users to view, embed, and download customizable outputs for various applications. The platform is designed to support technical enhancements in the future, with the potential to eventually incorporate various additional features. This tool serves as a step forward towards a modern era of conservation planning and management of freshwater biodiversity.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.370
Threshold uncertainty score0.997

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0040.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.226
Teacher spread0.212 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations30
Published2024
Admission routes1
Has abstractyes

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Same venuePeerJSame topicCrustacean biology and ecologyFrench-language works237,207