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Record W4403483230 · doi:10.1007/s00300-024-03311-3

High diversity of freshwater invertebrates on inuinnait nuna, the canadian arctic, revealed using mitochondrial DNA barcodes

2024· article· en· W4403483230 on OpenAlexafffundabout
Danielle S. J. Nowosad, Ian D. Hogg, Karl Cottenie, Carter Lear, Tyler A. Elliott, Jeremy R deWaard, Dirk Steinke, Sarah J. Adamowicz

Bibliographic record

VenuePolar Biology · 2024
Typearticle
Languageen
FieldEnvironmental Science
TopicEnvironmental DNA in Biodiversity Studies
Canadian institutionsUniversity of Guelph
FundersNatural Sciences and Engineering Research Council of CanadaCanada First Research Excellence FundGovernment of CanadaGenome CanadaOntario GenomicsUniversity of GuelphPolar Knowledge Canada
KeywordsBiologyMitochondrial DNAInvertebrateMarine invertebratesDNA barcodingArcticThe arcticDiversity (politics)Evolutionary biologyZoologyEcologyGeneticsGeneOceanography

Abstract

fetched live from OpenAlex

Knowledge of genetic and species-level diversity for freshwater invertebrates in the Canadian Arctic is currently limited. Here, we sampled benthic and planktonic invertebrates from 68 ponds, seven lakes, and six rivers near Cambridge Bay (Iqaluktuuttiaq), Nunavut, between 2018 and 2021 and analysed individuals using mitochondrial cytochrome c oxidase subunit 1 (COI) gene sequences. From the 9336 specimens collected, 7186 provided sequences > 400 base pairs (83% success rate), representing 3358 unique haplotypes and 467 putative species based on Barcode Index Numbers (BINs; as a surrogate for species-level diversity). Chironomidae (non-biting midges) was the most diverse taxon, followed by Trombidiformes mites and Anomopoda (water fleas). Species’ accumulation curves for total diversity as well as the major taxa suggest that taxa we identified represent < 63% of the total diversity likely to be found in this region of the western Canadian Arctic (estimated n = 739) during the ice-free season. Further sampling over a wider geographical range as well as assessments of temporal (seasonal and inter-annual) variability will be required to assess comprehensively the total species richness currently found in the Canadian Arctic. In the interim, the publicly available data we provide here can be used as a baseline for ongoing studies and to track ecological changes occurring in aquatic habitats of the central Canadian Arctic and beyond.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesInsufficient payload (model declined to judge)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.088
Threshold uncertainty score0.999

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.219
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations3
Published2024
Admission routes3
Has abstractyes

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