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Record W4403508643 · doi:10.1107/s2052520624008679

The seventh blind test of crystal structure prediction: structure ranking methods

2024· article· en· W4403508643 on OpenAlexafffund
Lily M. Hunnisett, Nicholas Francia, Jonas Nyman, Nathan S. Abraham, Srinivasulu Aitipamula, Tamador Alkhidir, Mubarak Almehairbi, Andrea Anelli, Dylan M. Anstine, John E. Anthony, Joseph E. Arnold, Faezeh Bahrami, Michael A. Bellucci, Gregory J. O. Beran, Rajni M. Bhardwaj, Raffaello Bianco, J.A. Bis, A. Daniel Boese, James Bramley, Doris E. Braun, Patrick W. V. Butler, Joseph Cadden, Stephen A. R. Carino, Ctirad Červinka, Eric J. Chan, Chao Chang, Sarah Melanie Clarke, Simon J. Coles, Cameron Cook, Richard I. Cooper, Tom Darden, Graeme M. Day, H. Dietrich, Antonio G. DiPasquale, Bhausaheb Dhokale, Bouke P. van Eijck, M.R.J. Elsegood, Dzmitry S. Firaha, Wenbo Fu, Kaori Fukuzawa, Nikolaos Galanakis, Midori Goto, Chandler Greenwell, Rui Guo, J. A. Harter, Julian Helfferich, Johannes Hoja, John Hone, Richard S. Hong, Michal Hušák, Yasuhiro Ikabata, Olexandr Isayev, Ommair Ishaque, Varsha Jain, Yingdi Jin, Aling Jing, Erin R. Johnson, Ian M. Jones, K. V. Jovan Jose, Elena A. Kabova, Adam C. Keates, Paul F. Kelly, Jiří Klimeš, Veronika Kostková, He Li, Xiaolu Lin, Alexander List, Congcong Liu, Yifei Michelle Liu, Zenghui Liu, Ivor Lončarić, Joseph W. Lubach, Jan Ludík, Noa Marom, Hiroyuki Matsui, Alessandra Mattei, R. Alex Mayo, John W. Melkumov, Bruno Mladineo, Sharmarke Mohamed, Zahrasadat Momenzadeh Abardeh, Hari S. Muddana, Naofumi Nakayama, Kamal Singh Nayal, Marcus A. Neumann, Rahul Nikhar, Shigeaki Obata, Dana O’Connor, Artem R. Oganov, Koji Okuwaki, Alberto Otero‐de‐la‐Roza, Sean Parkin, Antonio Parunov, Rafał Podeszwa, Alastair J. A. Price, Louise S. Price, Sarah L. Price, Michael R. Probert, Angeles Pulido, Gunjan Rajendra Ramteke, Attiq-Ur Rehman, Susan M. Reutzel‐Edens, Jutta Rogal, Marta J. Ross, Adrian F. Rumson, G. Sadiq, Zeinab M. Saeed, Alireza Salimi, Kiran Sasikumar, Sivakumar Sekharan, Kenneth Shankland, Baimei Shi, Xuekun Shi, Kotaro Shinohara, A. Geoffrey Skillman, Hongxing Song, Nina Strasser, Jacco van de Streek, Isaac J. Sugden, Guangxu Sun, Krzysztof Szalewicz, Lu Tan, Frank Tarczynski, Christopher R. Taylor, Alexandre Tkatchenko, Rithwik Tom, Petr Touš, Mark E. Tuckerman, Pablo A. Unzueta, Yohei Utsumi, Leslie Vogt-Maranto, Jake Weatherston, Lawrence H. Wilkinson, Robert D. Willacy, Łukasz Wojtas, Grahame R. Woollam, Yi Yang, Zhuocen Yang, Etsuo Yonemochi, Xin Yue, Qun Zeng, Tian Zhou, Yunfei Zhou, R.I. Zubatyuk, Jason C. Cole

Bibliographic record

VenueActa Crystallographica Section B Structural Science Crystal Engineering and Materials · 2024
Typearticle
Languageen
FieldMaterials Science
TopicX-ray Diffraction in Crystallography
Canadian institutionsDalhousie University
FundersArmy Research LaboratoryArmy Research OfficeDivision of ChemistryDivision of Materials ResearchJapan Society for the Promotion of ScienceHrvatska Zaklada za ZnanostScience and Technology Facilities CouncilResearch Institute for Information Technology, Kyushu UniversityNatural Sciences and Engineering Research Council of CanadaArgonne National LaboratoryOak Ridge Institute for Science and EducationOffice of ScienceBill and Carol Fox Center for Humanistic Inquiry, Emory UniversityFundación para el Fomento en Asturias de la Investigación Científica Aplicada y la TecnologíaRussian Science FoundationUniversity of SouthamptonWorkforce Development for Teachers and ScientistsGrantová Agentura České RepublikyXtalPiKhalifa University of Science, Technology and ResearchDell EMCKarl-Franzens-Universität GrazDeutsche ForschungsgemeinschaftEngineering and Physical Sciences Research CouncilAgencia Estatal de InvestigaciónOak Ridge Associated UniversitiesEli Lilly and CompanyU.S. Department of EnergyEuropean CommissionUniversity of ReadingNational Science Foundation
KeywordsRanking (information retrieval)Crystal structure predictionTest (biology)Artificial intelligenceComputer scienceCrystal structureStatisticsMathematicsCrystallographyGeologyChemistry

Abstract

fetched live from OpenAlex

A seventh blind test of crystal structure prediction has been organized by the Cambridge Crystallographic Data Centre. The results are presented in two parts, with this second part focusing on methods for ranking crystal structures in order of stability. The exercise involved standardized sets of structures seeded from a range of structure generation methods. Participants from 22 groups applied several periodic DFT-D methods, machine learned potentials, force fields derived from empirical data or quantum chemical calculations, and various combinations of the above. In addition, one non-energy-based scoring function was used. Results showed that periodic DFT-D methods overall agreed with experimental data within expected error margins, while one machine learned model, applying system-specific AIMnet potentials, agreed with experiment in many cases demonstrating promise as an efficient alternative to DFT-based methods. For target XXXII, a consensus was reached across periodic DFT methods, with consistently high predicted energies of experimental forms relative to the global minimum (above 4 kJ mol −1 at both low and ambient temperatures) suggesting a more stable polymorph is likely not yet observed. The calculation of free energies at ambient temperatures offered improvement of predictions only in some cases (for targets XXVII and XXXI). Several avenues for future research have been suggested, highlighting the need for greater efficiency considering the vast amounts of resources utilized in many cases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.091
metaresearch head score (Gemma)0.224
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.091
Threshold uncertainty score0.480

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0910.224
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0020.004
Bibliometrics0.0030.002
Science and technology studies0.0040.004
Scholarly communication0.0040.004
Open science0.0040.005
Research integrity0.0060.004
Insufficient payload (model declined to judge)0.0150.009

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.262
Teacher spread0.254 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations70
Published2024
Admission routes2
Has abstractyes

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