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Record W4403777594 · doi:10.1111/geb.13917

<scp>FreshLanDiv</scp>: A Global Database of Freshwater Biodiversity Across Different Land Uses

2024· article· en· W4403777594 on OpenAlexaff
Minghua Shen, Roel van Klink, Alban Sagouis, Danielle Katharine Petsch, Deborah A. Abong’o, Janne Alahuhta, Salman Abdo Al‐Shami, Laura Cecilia Armendáriz, Mi‐Jung Bae, Tiago Octavio Begot, Jérôme Belliard, Jonathan P. Benstead, Francieli de Fátima Bomfim, Emile Bredenhand, William R. Budnick, Marcos Callisto, Lenize Batista Calvão, Claudia Patricia Camacho Rozo, Miguel Cañedo‐Argüelles, Fernando Geraldo de Carvalho, Jacqueline M. Chapman, Lauren J. Chapman, Qiuwen Chen, Barry Chernoff, Luciana Cibils‐Martina, Gerard P. Closs, Juliano José Corbi, Erlane José Cunha, Almir Manoel Cunico, Patricio De los Ríos-Escalante, Sylvain Dolédec, Bárbara Dunck, Augustine Ovie Edegbene, Augustin C. Engman, Tibor Erős, Katharina Eichbaum Esteves, Ruan Carlos Pires Faquim, Ana Paula Justino Faria, Cláudia Maris Ferreira, Márcio Cunha Ferreira, Pablo Fierro, Pâmela V. Freitas, Vincent Fugère, Thiago Deruza Garcia, Xingli Giam, Gabriel Murilo Ribeiro Gonino, Juan David González‐Trujillo, Éder André Gubiani, Neusa Hamada, Roger J. Haro, Luiz Ubiratan Hepp, Guido A. Herrera‐R, Matthew J. Hill, Carlos Iñiguez‐Armijos, Aurélien Jamoneau, Micael Jonsson, Leandro Juen, Wilbert T. Kadye, Kahirun Kahirun, Aventino Kasangaki, Chad A. Larson, Alexandre Leandro Pereira, Thibault Leboucher, Gustavo Figueiredo Marques Leite, Dunhai Li, Ana Luiza‐Andrade, Sarah H. Luke, Matthew J. Lundquist, Daniela Lupi, Jorge Machuca‐Sepúlveda, Messias Alfredo Macuiane, Néstor Javier Mancera-Rodrı́guez, Javier A. Márquez, Renato Tavares Martins, Frank O. Masese, Marcia S. Meixler, Thaísa Sala Michelan, María José Monge‐Salazar, Joseph L. Mruzek, Hernán Mugni, Hilton G.T. Ndagurwa, Augustine Suh Niba, Jorge Nimptsch, Rodolfo Novelo‐Gutiérrez, Hannington Ochieng, Rodrigo I. Pacheco-Díaz, Young‐Seuk Park, Sophia I. Passy, Richard G. Pearson, Alexandre Peressin, Eduardo Périco, Mateus Marques Pires, Helen M. Poulos, Romina E. Príncipe, Bruno da Silveira Prudente, Blanca Ríos‐Touma, Renata Ruaro, Juan J. Schmitter‐Soto, Fabiana Schneck, Uwe Horst Schulz, C. Selvakumar, Chhatra Mani Sharma, Tadeu Siqueira, Marina Solís, Raniere Garcez Costa Sousa, Emily H. Stanley, Csilla Stenger‐Kovács, Évelyne Tales, Fabrício Barreto Teresa, Ian Thornhill, Juliette Tison‐Rosebery, Thiago Bernardi Vieira, Sebastián Villada‐Bedoya, James C. White, Paul J. Wood, Zhicai Xie, Catherine M. Yule, João Antônio Cyrino Zequi, Jonathan M. Chase

Bibliographic record

VenueGlobal Ecology and Biogeography · 2024
Typearticle
Languageen
FieldEnvironmental Science
TopicFish Ecology and Management Studies
Canadian institutionsUniversité du Québec à Trois-RivièresCarleton UniversityMcGill UniversityWilfrid Laurier University
FundersNational Research, Development and Innovation OfficeDeutsches Zentrum für integrative Biodiversitätsforschung Halle-Jena-LeipzigNemzeti Kutatási Fejlesztési és Innovációs HivatalFundação de Amparo à Pesquisa do Estado do AmazonasChina Scholarship CouncilDeutsche ForschungsgemeinschaftConselho Nacional de Desenvolvimento Científico e TecnológicoBiodiversa+
KeywordsMacrophyteBiodiversityAbundance (ecology)GeographyEcologyTaxonWetlandLand useMetadataDatabaseFreshwater fishFish <Actinopterygii>BiologyFishery

Abstract

fetched live from OpenAlex

ABSTRACT Motivation Freshwater ecosystems have been heavily impacted by land‐use changes, but data syntheses on these impacts are still limited. Here, we compiled a global database encompassing 241 studies with species abundance data (from multiple biological groups and geographic locations) across sites with different land‐use categories. This compilation will be useful for addressing questions regarding land‐use change and its impact on freshwater biodiversity. Main Types of Variables Contained The database includes metadata of each study, sites location, sample methods, sample time, land‐use category and abundance of each taxon. Spatial Location and Grain The database contains data from across the globe, with 85% of the sites having well‐defined geographical coordinates. Major Taxa and Level of Measurement The database covers all major freshwater biological groups including algae, macrophytes, zooplankton, macroinvertebrates, fish and amphibians.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.006
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: Not applicable
GenreCandidate signal: Dataset · Consensus signal: Dataset
Teacher disagreement score0.039
Threshold uncertainty score0.131

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.006
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0200.040
Science and technology studies0.0000.000
Scholarly communication0.0020.002
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0390.013

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.222
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreDataset

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations9
Published2024
Admission routes1
Has abstractyes

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