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Record W4403835216 · doi:10.1681/asn.2024npy5y3y7

Pax2 Mutant Mice Have Dysregulated Nuclear Maintenance, Cell Proliferation, and Motility Associated with Abnormal Glomerular Repair

2024· article· en· W4403835216 on OpenAlexaff
Joanna Cunanan, Jasmeet Kaur Benepal, V Gregorio, Samantha Ricardo, Emine Bilge Çaparali, Ana Konvalinka, Moumita Barua

Bibliographic record

VenueJournal of the American Society of Nephrology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRenal and related cancers
Canadian institutionsToronto General HospitalUniversity of TorontoUniversity Health Network
Fundersnot available
KeywordsMotilityMutantCell biologyCell growthCancer researchBiologyInternal medicineEndocrinologyMedicineGeneticsGene

Abstract

fetched live from OpenAlex

Background: Focal segmental glomerulosclerosis (FSGS) is characterized by podocyte loss. Parietal epithelial cells (PECs) that express PAX2, a regulator of cellular and morphological changes during glomerular development, can regenerate podocytes after injury. We previously found that pathogenic PAX2 missense variants account for 4% of adult FSGS, and mutant PAX2+ PECs display impaired podocyte regeneration resulting in worsened FSGS in mice with a Pax2 missense variant (Pax2-MV) (Figure 1A-B). In this study, we report the molecular mechanisms of impaired podocyte regeneration in Pax2-MV. Methods: FSGS was induced by Adriamycin (ADR) in Pax2-MV and wildtype mice. Isolated glomeruli were subjected to mass spectrometry-based proteomics and analyzed by Gene Ontology (GO) and Reactome pathway enrichment analysis. Results: Downregulated processes in ADR-injured Pax2-MV compared to wildtype glomeruli include decreased metabolic processes and actin cytoskeleton structure regulation (Figure 1C), consistent with worsened podocyte loss observed in these mice. Upregulated processes in ADR-injured Pax2-MV include those involved in nuclear abnormalities, cell proliferation and motility (Figure 1D). These are consistent with the increased glomerular tuft cell proliferation observed in ADR-injured Pax2-MV mice. This suggests a maladaptive attempt to regenerate podocytes due to the lack of regeneration from mutant PAX2+ PECs. Conclusion: In ADR-injured Pax2-MV, downregulated metabolism and cytoskeleton structure are typical signatures of podocyte loss. However, our novel findings are the upregulated pathways that are consistent with dysregulated PAX2 signaling, including nuclear abnormalities, cell proliferation and motility. Funding: Government Support – Non-U.S.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.022

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0070.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.205
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

Explore more

Same venueJournal of the American Society of NephrologySame topicRenal and related cancersFrench-language works237,207