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Record W4404035252 · doi:10.1101/2024.11.01.24316601

A confounder debiasing method for RCT-like comparability enables Machine Learning-based personalization of survival benefit in living donor liver transplantation

2024· preprint· en· W4404035252 on OpenAlexaff
Anirudh Gangadhar, Bima J. Hasjim, Xun Zhao, Yingji Sun, Joseph Chon, Aman Sidhu, Elmar Jaeckel, Nazia Selzner, Mark S. Cattral, Blayne A. Sayed, Michael Brudno, Chris McIntosh, Mamatha Bhat

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldMedicine
TopicOrgan Transplantation Techniques and Outcomes
Canadian institutionsVector InstitutePrincess Margaret Cancer CentreUniversity Health NetworkToronto General HospitalUniversity of TorontoMcGill University Health Centre
Fundersnot available
KeywordsDebiasingComparabilityRandomized controlled trialPersonalizationConfoundingLiving donor liver transplantationMedicineTransplantationComputer scienceLiver transplantationSurgeryPsychologyInternal medicineWorld Wide WebMathematics

Abstract

fetched live from OpenAlex

Abstract Many clinical questions in medicine cannot be answered through randomized controlled trials (RCTs) due to ethical or feasibility constraints. In such cases, observational data is often the only available resource for evaluating treatment effects. To address this challenge, we have developed Decision Path Similarity Matching (DPSM), a novel machine learning (ML)-based algorithm that simulates RCT-like conditions to debias observational data. In this study, we apply DPSM to the clinical question of living donor liver transplantation (LDLT) versus deceased donor liver transplantation (DDLT), helping to identify which patients benefit most from LDLT. DPSM leverages decision paths from a Random Forest classifier to perform accurate, one-to-one matching between LDLT and DDLT recipients, minimizing confounding while retaining interpretability. Using data from the Scientific Registry of Transplant Recipients (SRTR), including 4,473 LDLT and 68,108 DDLT patients transplanted between 2002 and 2023, we trained independent Random Survival Forest (RSF) models on the matched cohorts to predict post-transplant survival. DPSM successfully reduced confounding associations between the two groups as shown by a decrease in area under the receiver operating characteristic (AUROC) from 0.82 to 0.51. Subsequently, RSF (C-index ldlt =0.67, C-index ddlt =0.74) outperformed the traditional Cox model (C-index ldlt =0.57, C-index ddlt =0.65). The predicted 10-year mean survival gain was 10.3% (SD = 5.7%). In conclusion, DPSM provides an effective approach for creating RCT-like comparability from observational data, enabling personalized survival predictions. By leveraging real-world data where RCTs are impractical, this method offers clinicians a tool for transitioning from population-level evidence to more nuanced, personalization.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.153
metaresearch head score (Gemma)0.372
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.153
Threshold uncertainty score0.811

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.1530.372
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0020.003
Bibliometrics0.0030.002
Science and technology studies0.0010.002
Scholarly communication0.0020.002
Open science0.0020.003
Research integrity0.0020.003
Insufficient payload (model declined to judge)0.0060.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.041
GPT teacher head0.331
Teacher spread0.290 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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