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Record W4404161055 · doi:10.5376/rgg.2024.15.0025

Dynamic Changes and Biological Significance of MicroRNA Expression Profiles in Rice under Cold Stress

2024· article· en· W4404161055 on OpenAlex
Luo Fan, Xiaoli Zhou, Meng-Meng Yin, Juan Li, Qian Zhu, Huirong Dong, Lijuan Chen, Dongsun Lee

Why this work is in the frame

A frame that forgets how it found something cannot be audited. These are the routes that admitted this work.

venuePublished in a venue whose home country is Canada.
no affNo Canadian affiliation: this work is invisible to an affiliation-only frame.
No Canadian affiliation. An affiliation-only frame, the usual design, would never have seen this work. It is one of the works that make the case for inverting the frame.

Bibliographic record

VenueRice Genomics and Genetics · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Molecular Biology Research
Canadian institutionsnot available
Fundersnot available
KeywordsCold stressmicroRNABiologyExpression (computer science)Biological systemComputational biologyGeneticsComputer scienceGene

Abstract

fetched live from OpenAlex

Cold stress is a significant abiotic factor that adversely affects rice ( Oryza sativa ) growth and productivity. This study investigates the dynamic changes and biological significance of microRNA (miRNA) expression profiles in rice under cold stress. Utilizing high-throughput techniques such as microarrays and stem-loop reverse transcription quantitative PCR (ST-RT qPCR), researchers identified several miRNAs that exhibit differential expression in response to cold stress. Notably, miR1320, miR319, and miR156 were found to play crucial roles in enhancing cold tolerance by targeting specific transcription factors and modulating stress-responsive genes. For instance, miR1320 targets the ERF transcription factor OsERF096, which is involved in jasmonic acid (JA)-mediated signaling pathways, while miR319 targets OsPCF6 and OsTCP21, contributing to the regulation of cold stress-responsive genes such as DREB1A/B/C  and TPP1/2 . Additionally, miR156 enhances cold tolerance by targeting OsSPL3, which in turn regulates the expression of OsWRKY71 and other stress-related transcription factors. These findings underscore the importance of miRNAs in the complex regulatory networks that govern rice’s response to cold stress, providing valuable insights for developing cold-tolerant rice varieties.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.543
Threshold uncertainty score0.165

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.024
GPT teacher head0.251
Teacher spread0.227 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it