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Record W4404169970 · doi:10.1101/2024.11.08.24316708

Observational Report on Functional SARS-CoV-2 Immune Responses in Immune Competent and Compromised Individuals

2024· preprint· en· W4404169970 on OpenAlexaff
Laura J. Peek, Alicia L. Patrick, Niki Givens, Brittany D’Alessio, Amanda Weaver, Leisa Jackson, Thomas J. White, Gary A. Pestano

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsDillon Consulting
Fundersnot available
KeywordsImmune systemObservational studySevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)VirologyCoronavirus disease 2019 (COVID-19)ImmunologyMedicineBiologyInternal medicineInfectious disease (medical specialty)Disease

Abstract

fetched live from OpenAlex

Abstract Objectives Durable immune responses against SARS-CoV-2 are generally observed in previously infected individuals. Immunocompromised individuals may show less durable responses. Investigation of immune responses is needed to inform individuals on whether measures such as boosters may be advisable. Methods Three SARS-CoV-2 ELISA tests were utilized to monitor responses in 82 individuals in the United States [nucleocapsid protein (N)-specific antibody and spike RBD (receptor binding domain)-specific neutralizing antibody (nAb), and spike-specific interferon-γ (IFN-γ) release by T cells]. De-identified case reports highlight results for this cohort; 21 previously infected and vaccinated, 57 never infected and vaccinated, 2 breakthrough infections post-vaccination and 2 neither infected nor vaccinated. Results The vaccines generated nAb responses in naïve donors, and in previously infected individuals with waning responses, immunosuppression, or weak infection responses. The cutoff for the nAb potency was established at 41.1 IU/mL when calibrated to the WHO International Standard (IU) using the NCI SARS-CoV-2 Standard. This relationship has the critical potential to allow comparisons of nAb measures to be utilized in studies of correlates of protection. Further, previously infected donors demonstrated robust T cell activity, while vaccinated and infection-naïve individuals had lower responses. Conclusions Calibrated ELISA tests may aid broad vaccination strategies given their low cost and wide accessibility. Additional studies that relate measures of the adaptive responses to immunity from serious disease and infection are needed.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.002
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.002
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0000.001
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.143
GPT teacher head0.380
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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