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Record W4404408980 · doi:10.1088/2515-7647/ad936b

Multispectral multiplexed confocal FLIM for live cell imaging

2024· article· en· W4404408980 on OpenAlexafffund
Morgan Richards, Elizabeth J. Osterlund, Andrea Rhikkaella Buendia, Nikolina Malic, Ray Truant, Qiyin Fang

Bibliographic record

VenueJournal of Physics Photonics · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicAdvanced Fluorescence Microscopy Techniques
Canadian institutionsMcMaster University
FundersNatural Sciences and Engineering Research Council of CanadaMitacsCanada Foundation for Innovation
KeywordsMultispectral imageSpectral imagingFluorescence-lifetime imaging microscopyConfocalPhotobleachingOpticsSpectral bandsImaging spectrometerFull spectral imagingHyperspectral imagingFrame rateSpectrometerMaterials sciencePhysicsFluorescenceRemote sensingGeology

Abstract

fetched live from OpenAlex

Abstract Spectrally resolved fluorescence lifetime imaging (FLIM) with high spatial precision offers comprehensive information on species localization and behavior. It is challenging to resolve weak fluorescence signals in multiple dimensions (spatial, spectral, and temporal) at high frame rates, especially in dynamic live cell processes, as photobleaching and phototoxicity limit acceptable photon count rates. We developed a multiplexed confocal FLIM technique, which uses a prism-based imaging spectrometer to separate a 10 × 10 array of confocal foci into their spectral components. This allows the sampling of the spectra by a time-resolved image sensor to produce a multispectral time-resolved data set used for generating multispectral lifetime images. This system captures 300 × 300 pixel FLIM containing 12 unique spectral bands covering a 450–700 nm spectral range in 1.8 s of exposure. Its performance was demonstrated in fixed stained samples and in multispectral imaging of FLIM-FRET in live cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.005
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.289
Teacher spread0.282 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

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