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Record W4404866681 · doi:10.1101/2024.11.25.24317901

Clinical Validation of Metabolite Markers for Early Lung Cancer Detection

2024· preprint· en· W4404866681 on OpenAlexaff
Lun Zhang, Jiamin Zheng, Rashid Ahmed Bux, Claudia Torres-Calzada, Rupasri Mandal, Andrew Maksymuik, Paramjit S. Tappia, Philippe Joubert, Christian Rolfo, David S. Wishart

Bibliographic record

VenuemedRxiv · 2024
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsInstitut universitaire de cardiologie et de pneumologie de QuébecSt. Boniface HospitalCancerCare ManitobaUniversity of ManitobaThe Metabolomics Innovation CentreUniversité LavalUniversity of Alberta
Fundersnot available
KeywordsMetaboliteLung cancerMedicineInternal medicineComputational biologyOncologyBiology

Abstract

fetched live from OpenAlex

Abstract Non-small cell lung cancer (NSCLC), comprising 85% of lung cancers, is a leading cause of cancer mortality. Early detection enhances survival, but current screening methods are limited. This retrospective study used targeted mass spectrometry-based metabolomics on 680 plasma samples from NSCLC patients and controls (discovery cohort) and 216 samples (validation cohort). Logistic regression models with a subset of ten metabolites achieved over 90% area under the ROC curve (AUROC) for distinguishing patients from controls, including early-stage disease. Incorporating smoking history improved model performance. In the discovery cohort, AUROCs were 93.6% (all stages), 93.7% (Stage I and II), and 93.9% (Stage I). Validation confirmed the high sensitivity and specificity of the models. This study demonstrates that metabolomic biomarkers provide a minimally invasive, sensitive, and specific tool for early NSCLC detection, potentially improving screening and patient outcomes. Future studies should validate these biomarkers in diverse populations. Statement of significance This study identifies plasma metabolite biomarkers that enable sensitive and specific early detection of NSCLC using minimally invasive blood sampling. Achieving over 90% area under the ROC curve for early-stage patients, the findings promise to improve lung cancer screening methods and enhance early interventions and patient outcomes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.007
metaresearch head score (Gemma)0.012
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.035

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0070.012
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0020.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.345
Teacher spread0.323 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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