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Impact of Sample Storage Time and Temperature on the Stability of Respiratory Viruses and Enteric Viruses in Wastewater

2024· article· en· W4404932719 on OpenAlexafffund
Yuanyuan Qiu, Richardson Mah, Logan A. Brand, Xiaoli Pang, Mathew Diggle, Graham Tipples

Bibliographic record

VenueMicroorganisms · 2024
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 detection and testing
Canadian institutionsAlberta Hospital EdmontonUniversity of Alberta
FundersAlberta Precision LaboratoriesGovernment of AlbertaPublic Health Agency of Canada
KeywordsWastewaterNorovirusVirologyVirusSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)BiologyPandemicMicrobiologyCoronavirus disease 2019 (COVID-19)Environmental scienceMedicineEnvironmental engineeringInternal medicine

Abstract

fetched live from OpenAlex

Wastewater-based surveillance (WBS) has been widely used to track SARS-CoV-2 as well as many other viruses in communities during the COVID pandemic and post-pandemic. However, it is still not clear how temperature and storage time would influence the stability of viruses in wastewater. In this study, we assessed the stability of SARS-CoV-2, pepper mild mottle virus (PMMoV), influenza viruses A (IAV) and B (IBV), respiratory syncytial virus (RSV), and enteric viruses in raw wastewater stored at room temperature, 4 °C, and -20 °C for 3 and 6 days. SARS-CoV-2, PMMoV, IAV, and enteric viruses were found to be stable up to 6 days after storing at room temperature or 4 °C. SARS-CoV-2 and RSV were more susceptible to freeze-thaw cycles compared to PMMoV and enteric viruses, which were relatively stable for up to 6 days stored at -20 °C. Low detection of IBV in wastewater made it difficult to evaluate the impact. Based on our findings, we conclude that short-term storage or transportation of wastewater samples within 6 days at ambient temperature or 4 °C is acceptable for the majority of these viruses. Freezing samples at -20 °C for even short periods is not recommended for WBS of respiratory viruses. The data obtained from this study can provide guidance for quality assurance purposes from the operational aspects of wastewater surveillance.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.272

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.038
GPT teacher head0.298
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2024
Admission routes2
Has abstractyes

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