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Record W4405133646 · doi:10.1101/2024.12.03.626650

Repeated climate-driven dispersal and speciation in peripheral populations of Pleistocene mastodons

2024· preprint· en· W4405133646 on OpenAlexaffabout
Emil Karpinski, Sina Baleka, Andrew R. Boehm, Tim Fedak, Chris Widga, Hendrik N. Poinar

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2024
Typepreprint
Languageen
FieldEnvironmental Science
TopicSpecies Distribution and Climate Change
Canadian institutionsMcMaster UniversityNova Scotia HospitalMcMaster University Medical Centre
Fundersnot available
KeywordsGenetic algorithmPleistoceneBiological dispersalGeographyEcologyBiologyPaleontologySociologyPopulationDemography

Abstract

fetched live from OpenAlex

Abstract Recent ancient DNA work has shed some light on the responses of mastodons to Pleistocene glacial/interglacial cycling but focused primarily on their expansion into Beringia. However, genetics has complicated our understanding of the relationships within Mammut , specifically between Pacific and American mastodon phylogeography and questioned whether these are in fact two separate species or regionally localized morphotypes. Here we expand on both avenues by sequencing and contextualizing the mitochondrial genome of a Pacific mastodon, as well as from several North American eastern specimens throughout the last 800 thousand years. We show that Pacific mastodons fall within a previously established, and deeply divergent mitochondrial clade, extending the range of this species into western Canada and potentially Mexico. We also present evidence for at least three discrete expansion events into northeastern coastal regions (i.e. Nova Scotia and the eastern continental shelf), and identify two new mastodon clades, which contain temporally distinct, but geographically co-occurrent specimens. This work sheds further light on mastodon taxonomy and phylogeography across North America throughout the Pleistocene, highlighting interglacial range expansion into northeastern America mirroring the effects on the western side of the continent (Beringia).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.015

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.235
Teacher spread0.213 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes2
Has abstractyes

Explore more

Same venuebioRxiv (Cold Spring Harbor Laboratory)→Same topicSpecies Distribution and Climate Change→French-language works237,207→