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Transcriptome analysis and physiological response to heat and cold stress in flax (Linum usitatissimum L) at the seedling stage

2024· article· en· W4405285081 on OpenAlexaff
Qian Zhao, Shuyao Li, Fu Wang, Jianyu Lu, Guo‐Fei Tan, Ningning Wang, Fan Qi, Changjiang Zhang, Michael K. Deyholos, Zhenyuan Zang, Jun Zhang, Jian Zhang

Bibliographic record

VenueEnvironmental and Experimental Botany · 2024
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicSeed Germination and Physiology
Canadian institutionsOkanagan University CollegeUniversity of British Columbia, Okanagan CampusUniversity of British Columbia
FundersJiangsu Provincial Department of Human Resources and Social SecurityJilin Agricultural University
KeywordsLinumSeedlingBiologyTranscriptomeBotanyFight-or-flight responseCold stressBiochemistryGene expressionGene

Abstract

fetched live from OpenAlex

Exposure to low temperatures renders flax seedlings vulnerable to oxidative damage, leading to delayed flowering, while high temperatures hinder seedling growth and negatively impact pollen viability. The seedling stage is particularly sensitive to environmental stressors, which can result in decreased flax yield and compromised seed oil quality. In this study, phenotypic assessments, along with physiological, biochemical, and transcriptomic analyses, were conducted on flax plants subjected to both high and low temperature stress, followed by 6 d recovery period. Results showed that the length and weight of seedlings and shoots were greatest in flax plants that had recovered from low temperature stress. After exposure to low temperature stress, flax seedlings exhibited the highest relative water content (RWC) and relative water loss (RWL) measuring 66.56% and 93.34%, respectively. The levels of Pro, SOD, CAT, POD, and nine phytohormones were significantly elevated compared to the control, whereas MDA levels were notably declined. A total of 43,471 genes were identified in the transcriptome data, Among these 32,319 exhibited sighificant differential expression. GO analysis highlighted enrichment in biological processes, cellular components, and molecular functions. KEGG analysis showed enrichment in plant hormone signal transduction and secondary metabolite biosynthesis. Moreover, differentially expressed genes associated with phytohormone synthesis and signal transduction were analyzed. The expression level of salicylic acid (SA) genes was significantly upregulated under high temperature stress, whereas jasmonic acid (JA) genes were significantly up-regulated under low temperature stress. These findings will elucidate the intricate regulatory mechanisms of osmoregulatory factors, antioxidant enzymes, and endogenous plant hormones in flax's response to high and low temperature stress, offering valuable insights for the selection and breeding of resistant flax varieties and the enhancement of genetic resources. • Flax ( Linum usitatissimum L.) is one of the most important oil and economic crops in China. • Temperature is crucial throughout the growth and development of plants. • Genes related to jasmonic acid (JA) exhibited significant up-regulation under low-temperature stress. • Genes related to salicylic acid (SA) exhibited significant up-regulation under high-temperature stress. • This finding deepen our understanding of flax seedlings response to temperature stress.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.748
Threshold uncertainty score0.689

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.245
Teacher spread0.231 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2024
Admission routes1
Has abstractyes

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