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Record W4405431165 · doi:10.1139/cjb-2024-0108

Bacterial diversity and community structure in native legume root nodules in intact and mining-disturbed Arctic tundra

2024· article· en· W4405431165 on OpenAlexafffundvenueabout
A. Li, Katherine M. Standen, Katherine Stewart, Eric G. Lamb

Bibliographic record

VenueBotany · 2024
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicClimate change and permafrost
Canadian institutionsUniversity of Saskatchewan
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsTundraBiologyPropaguleNative plantBradyrhizobiumRhizobiaPlant communityDesmodiumBotanyArcticEcosystemEcologyLegumeAgronomyNitrogen fixationIntroduced speciesEcological succession

Abstract

fetched live from OpenAlex

Mining restoration in Arctic regions is challenging due to harsh environmental conditions with slow natural ecosystem recovery taking decades or even centuries. Identifying native species that can both colonize disturbed areas and contribute to soil development is critical to hasten restoration timelines. Nodules were collected from four native legume species ( Astragalus alpinus Linnaeus, Hedysarum americanum (Michaux ex Pursh) Britton, Oxytropis arctica R. Brown, and Oxytropis maydelliana Trautvetter) observed to be naturally colonizing gravel quarries within a mine footprint near Rankin Inlet, Nunavut, Canada. Samples came from both gravel quarries and adjacent intact tundra . Next-generation sequencing of the 16S and nifH regions was used to characterize the nodule bacterial community composition and diversity. Despite the large differences in soil conditions between gravel substrates and intact tundra, no significant effects of soil environment were found on bacterial community composition within plant nodules. Further, few differences were observed in nodule communities between the plant species. Overall, the study suggests that the microbial propagules necessary for successful nodulation are present in gravel quarries. While restoration efforts involving native legumes may succeed without commercial inoculants, further research is needed to determine whether the rhizobia in these environments can provide sufficient nitrogen to support robust host plant growth.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.063
Threshold uncertainty score0.125

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.031
GPT teacher head0.237
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes4
Has abstractyes

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