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Record W4405464634 · doi:10.1016/j.biosx.2024.100569

Practical considerations for DNA sensing using Faradaic electrochemical impedance spectroscopy on ENIG PCB electrodes

2024· article· en· W4405464634 on OpenAlexaff
Shruti Ahuja, Avani Kulkarni, Richa Pandey, Kiran Kondabagil, Siddharth Tallur

Bibliographic record

VenueBiosensors and Bioelectronics X · 2024
Typearticle
Languageen
FieldEngineering
TopicBiosensors and Analytical Detection
Canadian institutionsUniversity of Calgary
Fundersnot available
KeywordsDielectric spectroscopyElectrodeMaterials scienceElectrical impedanceSpectroscopyElectrochemistryOptoelectronicsAnalytical Chemistry (journal)OpticsChemistryElectrical engineeringEngineeringPhysicsEnvironmental chemistry

Abstract

fetched live from OpenAlex

Electroless nickel immersion gold (ENIG) finish printed circuit board (PCB) substrates offer a cost-effective solution for electrochemical sensing of biomolecules. Electrochemical impedance spectroscopy (EIS) is highly sensitive and can differentiate between bioelectrochemical circuit elements over a wide frequency range. Traditional Faradaic EIS measurements often focus on charge transfer resistance ( R c t ) to determine analyte concentration. However, the long measurement time required to perform such EIS measurements down to very low frequencies (typically 0.1 Hz) can adversely affect the ENIG PCB due to gold layer degradation and copper corrosion. To overcome these issues, we propose using the constant phase element (CPE) in the electrical equivalent circuit in EIS measurements for DNA sensing. Our approach employs ENIG PCB electrodes functionalized with thiolated single-stranded DNA probes targeting the uidA gene of E. coli . We evaluate the specificity of this sensing scheme to a 166 bp complementary amplicon from E. coli against non-complementary amplicons of different lengths from E. coli and bacteriophage Phi6. By operating at higher frequencies ( > 10 Hz), CPE analysis reduces measurement times and minimizes the risk of PCB degradation. Preliminary findings indicate that the CPE impedance exhibits concentration-dependent changes with increasing target DNA concentrations. We also present preliminary results for utilizing this sensing mechanism to detect E. coli from wastewater samples. • Faradaic EIS analysis on ENIG PCB substrates for electrochemical DNA sensors. • CPE-based rapid measurement safeguards PCB integrity against corrosion. • CPE impedance changes with target DNA concentration, effective for complex samples. • CPE shows reversal in trend with increasing DNA concentration.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.362
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.288
Teacher spread0.260 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2024
Admission routes1
Has abstractyes

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