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Record W4405583934 · doi:10.1111/all.16429

Food Allergy Genetics and Epigenetics: A Review of Genome‐Wide Association Studies

2024· review· en· W4405583934 on OpenAlexafffund
Aleix Arnau‐Soler, Bénédicte L. Tremblay, Yidan Sun, Anne‐Marie Madore, Mathieu Simard, Elin T.G. Kersten, Ahla Ghauri, Ingo Marenholz, Thomas Eiwegger, Elinor Simons, Edmond S. Chan, Kari C. Nadeau, Vanitha Sampath, Bruce Mazer, Susan J. Elliott, Christine Hampson, Lianne Soller, Andrew J. Sandford, Philippe Bégin, Jennie Hui, B. Wilken, Jennifer Gerdts, Adrienn N. Bourkas, Anne K. Ellis, Denitsa Vasileva, Ann E. Clarke, Aïda Eslami, Moshe Ben‐Shoshan, David Martino, Denise Daley, Gerard H. Koppelman, Catherine Laprise, Young‐Ae Lee, Yuka Asai

Bibliographic record

VenueAllergy · 2024
Typereview
Languageen
FieldMedicine
TopicFood Allergy and Anaphylaxis Research
Canadian institutionsUniversity of CalgaryQueen's UniversityUniversité LavalCentre Hospitalier de l’Université de MontréalCentre Hospitalier Universitaire Sainte-JustineUniversity of WaterlooMcGill University Health CentreUniversity of ManitobaAllerGenHospital for Sick ChildrenUniversité du Québec à ChicoutimiChildren's Hospital Research Institute of ManitobaMontreal Children's HospitalUniversity of TorontoSickKids FoundationUniversity of British Columbia
FundersNational Institute of Environmental Health SciencesNational Institute of Allergy and Infectious DiseasesAbbVie CanadaRegeneron PharmaceuticalsNational Institutes of HealthLEO PharmaSanofi GenzymePfizerIncyteEuropean Food Safety AuthoritySun PharmaNational Heart, Lung, and Blood InstituteHospital for Sick ChildrenUniversité du Québec à ChicoutimiCanadian Institutes of Health ResearchNovartis PharmaDanoneCanadian Dermatology FoundationSanofiTeva Pharmaceutical IndustriesNovartisAimmune TherapeuticsAstraZenecaEli Lilly and CompanyBristol-Myers Squibb
KeywordsEpigeneticsGenome-wide association studyGenetic associationFood allergyEpigenomeAllergyBiologyAtopic dermatitisDiseaseContext (archaeology)GeneticsImmunologyMedicineGeneDNA methylationSingle-nucleotide polymorphismGenotypeGene expression

Abstract

fetched live from OpenAlex

ABSTRACT In this review, we provide an overview of food allergy genetics and epigenetics aimed at clinicians and researchers. This includes a brief review of the current understanding of genetic and epigenetic mechanisms, inheritance of food allergy, as well as a discussion of advantages and limitations of the different types of studies in genetic research. We specifically focus on the results of genome‐wide association studies in food allergy, which have identified 16 genetic variants that reach genome‐wide significance, many of which overlap with other allergic diseases, including asthma, atopic dermatitis, and allergic rhinitis. Identified genes for food allergy are mainly involved in epithelial barrier function (e.g., FLG , SERPINB7 ) and immune function (e.g., HLA , IL4 ). Epigenome‐wide significant findings at 32 loci are also summarized as well as 14 additional loci with significance at a false discovery of < 1 × 10 −4 . Integration of epigenetic and genetic data is discussed in the context of disease mechanisms, many of which are shared with other allergic diseases. The potential utility of genetic and epigenetic discoveries is deliberated. In the future, genetic and epigenetic markers may offer ways to predict the presence or absence of clinical IgE‐mediated food allergy among sensitized individuals, likelihood of development of natural tolerance, and response to immunotherapy.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Review · Consensus signal: Review
Teacher disagreement score0.853
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0030.001
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.083
GPT teacher head0.387
Teacher spread0.304 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designNot applicable
Domainnot available
GenreReview

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations10
Published2024
Admission routes2
Has abstractyes

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