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Automated Beer Analysis by NMR Spectroscopy

2024· article· en· W4405730830 on OpenAlexafffund
Brian L. Lee, Fatemeh Shahin, Alyaa Selim, Mark Berjanskii, Claudia Torres-Calzada, K. Prashanthi, Rupasri Mandal, David S. Wishart

Bibliographic record

VenueACS Food Science & Technology · 2024
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMetabolomics and Mass Spectrometry Studies
Canadian institutionsThe Metabolomics Innovation CentreUniversity of Alberta
FundersCanada Foundation for InnovationNational Center for Complementary and Integrative HealthGenome CanadaAlberta InnovatesOffice of Dietary Supplements
KeywordsProfiling (computer programming)Nuclear magnetic resonance spectroscopyProton NMRNMR spectra databaseChemistryAnalytical Chemistry (journal)Spectral lineComputer scienceChromatographyPhysicsStereochemistryProgramming language

Abstract

fetched live from OpenAlex

Previously, we reported on the development of MagMet, a tool capable of automatically processing and quantifying 1D 1 H NMR spectra of complex chemical mixtures, including biofluids such as human serum or plasma and, more recently, beverages such as wine. In this article, we present an extension of MagMet, called MagMet-B, for the automated profiling of 1D 1 H NMR spectra of beer. We curated a comprehensive 1D 1 H NMR spectral library comprising 81 more abundant metabolites commonly found in beer samples and optimized the MagMet algorithm to accurately fit these compounds. A comparison with manual profiling using the Chenomx NMR Suite (Version 8.3) showed a strong correlation between the manually measured and automated MagMet metabolite concentrations, with a mean absolute percent error of 13% and a median absolute percent error of 9%. Time-to-process comparisons show that MagMet-B is up to 45× faster than manual analysis. The MagMet-B Web server, which is specifically tailored for profiling beer NMR spectra at 700 MHz, is now accessible at https://magmet.ca .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.003
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.009
Threshold uncertainty score0.029

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.003
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0030.002
Science and technology studies0.0010.000
Scholarly communication0.0020.001
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0090.007

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.267
Teacher spread0.261 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2024
Admission routes2
Has abstractyes

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