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Record W4405733362 · doi:10.1111/geb.13952

Sampling Simulation in a Virtual Ocean Reveals Strong Sampling Effect in Marine Diversity Patterns

2024· article· en· W4405733362 on OpenAlexafffund
André Menegotto, Derek P. Tittensor, Robert K. Colwell, Thiago F. Rangel

Bibliographic record

VenueGlobal Ecology and Biogeography · 2024
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicMarine Biology and Ecology Research
Canadian institutionsDalhousie University
FundersMinistério da Ciência, Tecnologia, Inovações e ComunicaçõesNatural Sciences and Engineering Research Council of CanadaEuropean CommissionFundação de Amparo à Pesquisa do Estado de GoiásJarislowsky FoundationCoordenação de Aperfeiçoamento de Pessoal de Nível SuperiorConselho Nacional de Desenvolvimento Científico e TecnológicoAgencia Estatal de InvestigaciónMinisterio de Ciencia, Innovación y Universidades
KeywordsSpecies richnessUndersamplingSampling (signal processing)MacroecologySampling biasEstimatorNull modelEcologyStatisticsSpecies diversityMarine protected areaRarefaction (ecology)BiologySample size determinationHabitatMathematicsComputer science

Abstract

fetched live from OpenAlex

ABSTRACT Aim Undersampling and other sources of sampling bias pose significant issues in marine macroecology, particularly when shaping conservation and management decisions. Yet, determining the extent to which such biases impact our understanding of marine diversity remains elusive. Here, utilising empirical data on sampling efforts, we sampled from virtually established species distributions to evaluate how deep is the influence of sampling bias on estimations of the latitudinal gradient in marine diversity. Location Atlantic Ocean. Time Period Present. Taxa Studied Ophiuroidea. Methods We developed a computer simulation that implements two null models of species distribution (the geometric constraints and the area model) in a two‐dimensional domain, replicates the latitudinal distribution of historical sampling efforts and then quantifies diversity metrics (observed and estimated species richness) and sample completeness for each grid cell and latitudinal band. Results We found consistent patterns of observed species richness across models, noting peaks at midlatitudes regardless of whether the true richness was unimodal or flat. Dips in equatorial diversity persisted even after using different methods of species richness estimation. Additional simulations showed that estimators' accuracy improved with increased sampling efforts, but only when samples were randomly distributed. Spatially aggregated samples inflate completeness without necessarily enhancing estimators' accuracy. Main Conclusions This finding emphasises the imperative of bolstering sampling efforts at tropical latitudes and deploying robust statistical techniques to mitigate undersampling effects. Meanwhile, we suggest considering sampling bias as an alternative null hypothesis for recorded marine diversity patterns.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.016
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.014
Threshold uncertainty score0.029

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.016
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.019
GPT teacher head0.276
Teacher spread0.256 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2024
Admission routes2
Has abstractyes

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