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Record W4406187403 · doi:10.1163/22941932-bja10176

Zooming into refractory timber: enhancing anatomical identification with confocal laser scanning microscopy and fluorescence

2025· article· en· W4406187403 on OpenAlexafffund
Martine Blais, Philippe Tanguay, Isabelle Duchesne, Danny Rioux

Bibliographic record

VenueIAWA Journal - KU Leuven/IAWA Journal · 2025
Typearticle
Languageen
FieldChemistry
TopicWood and Agarwood Research
Canadian institutionsNatural Resources CanadaCanadian Forest Service
FundersNatural Resources CanadaEnvironment and Climate Change CanadaUniversité Laval
KeywordsAutofluorescenceParenchymaOptical sectioningConfocal laser scanning microscopyMicroscopyLight sheet fluorescence microscopyFluorescence microscopeIdentification (biology)Confocal microscopyConfocalMaterials scienceFluorescenceBiomedical engineeringPathologyBiologyBiophysicsOpticsBotanyMedicineCell biology

Abstract

fetched live from OpenAlex

Summary Accurate wood identification is crucial for combatting the illegal logging and trade of forest products worldwide. However, certain challenges such as small specimen size, high wood density, and level of degradation can complicate the identification process. There is therefore a need to develop methods and use complementary techniques in forensic wood identification, particularly for difficult samples. This study utilized confocal laser scanning microscopy (CLSM) to detect and locate autofluorescence of axial parenchyma cells (APCs) to facilitate the identification of three challenging unknown wood specimens. These specimens posed difficulties for sectioning with a microtome due to brittleness, density, or small size constraints. CLSM results were compared with those from conventional light compound and stereomicroscopy. In our investigation, the three unknown wood samples were identified as Bobgunnia cf. fistuloides , Chlorocardium cf. rodiei , and Diphysa cf. carthagenensis . Specifically, CLSM confirmed the absence of apotracheal parenchyma in B . cf. fistuloides , which could not be determined using fluorescence stereomicroscopy. For D . cf. carthagenensis , CLSM’s fluorescence intensity highlighted axial parenchyma effectively, surpassing fluorescence stereomicroscopy. A notable advantage of our non-invasive CLSM method was its ability to examine smooth, unsectioned block surfaces, thereby enhancing preservation and ‘ in-situ’ visualization of APCs. Our results combining autofluorescence and CLSM clearly offered superior resolution in observing APCs compared to traditional microscopy and can thus be applied for increasing confidence in wood species identification.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.002
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow), Science and technology studies, Scholarly communication, Research integrity
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.023
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0020.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0020.000
Scholarly communication0.0020.001
Open science0.0010.000
Research integrity0.0000.004
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.008
GPT teacher head0.293
Teacher spread0.285 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes2
Has abstractyes

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