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Record W4406705377 · doi:10.1093/ecco-jcc/jjae190.0299

P0125 Crohn’s-associated invariant T Cells are associated with disease severity and location and are not affected by medication intake

2025· article· en· W4406705377 on OpenAlexaboutno aff
A. M. S. Mahdy, Hemmat Ahmed Elabd, Valeriia Kriukova, Christine Olbjørn, Gøri Perminow, May‐Bente Bengtson, Petr Ricanek, Svend Andersen, Trond Espen Detlie, Vendel A. Kristensen, Johannes R. Hov, Marte Lie Høivik, André Franke

Bibliographic record

VenueJournal of Crohn s and Colitis · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicInflammatory Bowel Disease
Canadian institutionsnot available
Fundersnot available
KeywordsMedicineCrohn's diseaseInternal medicineDiseaseGastroenterology

Abstract

fetched live from OpenAlex

Abstract Background Multiple alterations in the immune repertoire of IBD patients have been identified including, an expansion of a subset of type II natural killer T cells in CD patients, termed Crohn’s-associated invariant T cells (CAIT)1. Previously, we showed that CAIT cells respond to small molecules that resemble multiple microbial and drug metabolites2. This begs the question of whether CAIT cells are expanded due to the ongoing disease or the medications administrated to control the disease. Methods We profiled the T cell receptor alpha chain repertoire of 246 symptomatic controls, 228 treatment-naïve CD and 357 UC patients in addition to 176 and 329 treated CD and UC patients, respectively, from the Norwegian inception cohort IBSEN III3. Results Given that our cohort contained adult and paediatric IBD patients, we initially analysed the expansion of CAIT cells independently. Among adults, CAIT cells were significantly expanded in treatment-naïve CD patients (Fig. 1A) with a similar trend in paediatric patients (Fig. 1B) which arguably due to the small sample size was not significant. By combing the two groups, we observed a higher expansion of CAIT cells in treatment-naïve CD patients (Fig. 1C). The expansion of CAIT cells was also higher in treated-CD patients relative to controls and treated UC patients (Fig. 1D). By comparing the T cell repertoire of the UC and CD patients before and after treatment, we did not observe any significant difference in the expansion of CAIT cells due to medications (Fig. 1E, 1F). CAIT cells were significantly expanded in ileocolonic and ileal CD patients relative to colonic CD patients and controls (Fig. 2A). This effect persisted in treated patients (Fig. 2B), additionally, the expansion of CAIT cells did not differ significantly in the same patient before treatment and after treatment (Fig. 2C). The expansion also correlated with the disease-behavior4, with patients suffering from a stricturing CD showing higher levels of CAIT expansion relative to controls and CD patients with non-stricturing, non-penetrating (NSNP) disease (Fig. 2D). After treatment, patients with a stricturing disease had a higher CAIT expansion relative to controls and also to NSNP patients (Fig. 2E). By comparing the expansion of CAIT cells in CD patients with NSNP disease before and after treatment, we did not observe any significant difference (Fig. 2F). Conclusion Our results indicate that CAIT cells are not induced by treatment and that disease severity and location strongly correlates with their expansion, future efforts shall focus on identifying the spatial distribution of CAIT cells in the gut tissues as well as identifying potential antigens driving their expansion. References 1.Rosati E., Martini GR., Pogorelyy M V., Minervina AA., Degenhardt F., Wendorff M., et al. A novel unconventional T cell population enriched in Crohn’s disease. Gut 2022;71(11):2194 LP – 2204. Doi: 10.1136/gutjnl-2021-325373. 2.Minervina AA., Pogorelyy M V., Paysen S., Luening U., Degenhardt F., Franke A., et al. Crohn’s-associated invariant T cells (CAITs) recognise small sulfonate molecules on CD1d. Gut 2022:gutjnl-2022-328684. Doi: 10.1136/gutjnl-2022-328684. 3.Kristensen VA., Opheim R., Perminow G., Huppertz-Hauss G., Detlie TE., Lund C., et al. Inflammatory bowel disease in South-Eastern Norway III (IBSEN III): a new population-based inception cohort study from South-Eastern Norway. Scand J Gastroenterol 2021;56(8):899–905. Doi: 10.1080/00365521.2021.1922746. 4.Satsangi J., Silverberg MS., Vermeire S., Colombel J-F. The Montreal classification of inflammatory bowel disease: controversies, consensus, and implications. Gut 2006;55(6):749. Doi: 10.1136/gut.2005.082909.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.020

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0060.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.211
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations2
Published2025
Admission routes1
Has abstractyes

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