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Record W4407450550 · doi:10.1101/2025.02.13.638192

<i>Dehalobacter</i> dechlorinates dichloroanilines and contributes to the natural attenuation of dichloronitrobenzenes at a complex industrial site

2025· preprint· en· W4407450550 on OpenAlexaff
Sofia Pimentel Araújo, Line Lomheim, E. Erin Mack, Jim C. Spain, Sávia Gavazza, Elizabeth A. Edwards

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldEnvironmental Science
TopicMicrobial bioremediation and biosurfactants
Canadian institutionsUniversity of Toronto
FundersFundação de Amparo à Ciência e Tecnologia do Estado de Pernambuco
KeywordsMicrocosmBiotransformationReductive dechlorinationBioremediationEnvironmental chemistryChemistryBiodegradationBiologyEcologyContaminationBiochemistryOrganic chemistryEnzyme

Abstract

fetched live from OpenAlex

ABSTRACT The potential for bioremediation of dichloroanilines (2,3- and 3,4-DCA) and dichloronitrobenzenes (3,4-, 2,5- and 2,3-DCNB) was investigated using inocula from an industrial site in northeast of Brazil. Anaerobic biotransformation of these chlorinated compounds was observed in microcosms simulating site conditions, particularly when electron donor was added. To disentangle specific transformation reactions, sub-cultures from active anaerobic microcosms were enriched with individual DCA or DCNB isomers. In these single-compound enrichment cultures, DCNB isomers were reduced to the corresponding DCA. Each DCA isomer was stoichiometrically dechlorinated to the corresponding monochloroaniline (CA) isomers. Further dechlorination of CA to aniline was noted. The reduction of DCNB to DCA was sustained by known fermenters and possibly Desulfitobacterium , while Dehalobacter was clearly responsible for dechlorination of DCAs. These findings helped to attribute function to microbial community data retrieved from field samples to inform the conceptual site model and enable identification of bioactive zones and rate-limiting conditions at a complex site. More generally, these data broaden the understanding of the metabolic repertoire of Dehalobacter and provide a model for incorporating microbial community data into site remediation efforts. Abstract Figure Graphical Abstract Short synopsis statement A diverse microbial community contributes to natural attenuation at a complex contaminated site. Notably, dichloroanilines produced by biologically-mediated nitroreduction of dichloronitrobenzenes were dechlorinated by Dehalobacter .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.014
Threshold uncertainty score0.028

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.016
GPT teacher head0.214
Teacher spread0.199 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

Explore more

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