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Record W4408134283 · doi:10.4103/jcls.jcls_128_24

Exploring the potential of Cucumis melo phytoconstituents for treating diabetic neuropathy using in silico molecular docking and simulation: An experimental study

2025· article· en· W4408134283 on OpenAlexaff
Fahaad Alenazi, Sadaf Anwar, Halima Mustafa Elagib, Malik Asif Hussain, Tulika Bhardwaj, Mohd Adnan Kausar

Bibliographic record

VenueJournal of Clinical Sciences · 2025
Typearticle
Languageen
FieldComputer Science
TopicComputational Drug Discovery Methods
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsIn silicoCucumisDocking (animal)Computational biologyMedicineChemistryBiologyBotanyBiochemistryVeterinary medicine

Abstract

fetched live from OpenAlex

ABSTRACT Background Diabetic nephropathy (DN) is a serious kidney disease that damages and declines kidney function and is associated with long-term diabetes. It is a major global cause of chronic kidney disease that is impacted by oxidative stress, inflammation, high blood sugar, and genetics. Key targets include the renin-angiotensin-aldosterone system and the transforming growth factor-beta (TGF-b) pathway. To lessen inflammatory reactions, prevent oxidative damage, and slow the advancement of DN, researchers are investigating Sodium-Glucose Co-Transporter 2 (SGLT2) inhibitors, antioxidants, and inflammation modulators. TGF-β1, a cytokine, is crucial in DN, causing fibrosis, inflammation, and extracellular matrix accumulation. This study aims to investigate the therapeutic potential of phytoconstituents of Cucumis melo seeds in managing DN. Methods The study assessed molecular docking (MD) of target protein structure (TGF-β1) with potential 17 phytocompounds, assessing their lipophilicity and polarity in the brain or intestinal tract. Result In silico virtual screening, drug-likeliness analysis, and BOILED-Egg plot analysis infer two potential chemical leads, namely alpha-amyrin and campesterol with a binding energy of −10.13 kcal/mol and −9.18 kcal/mol, respectively, for drug discovery against DN. Further, MD simulation studies validate the docked complexes’ stability over time. Conclusion This research indicates that additional analysis is necessary to validate the inhibitory potential of alpha-amyrin and campesterol, utilizing bench-top methodologies to determine the most effective treatment plan for DN.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.001
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: Simulation or modeling
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.100
Threshold uncertainty score0.224

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0040.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.001
Open science0.0010.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.230
GPT teacher head0.497
Teacher spread0.267 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2025
Admission routes1
Has abstractyes

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