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Record W4408145351 · doi:10.1021/acs.jproteome.4c00651

<i>In Vitro</i> Exposure of A549 and J774A.1 Cells to SiO<sub>2</sub> and TiO<sub>2</sub> Nanoforms and Related Cellular- and Molecular-Level Effects: Application of Proteomics

2025· article· en· W4408145351 on OpenAlexafffund
Premkumari Kumarathasan, Nazila Nazemof, Erica Blais, Krishna Priya Syama, Dalibor Breznan, Yasmine Dirieh, Hiroyuki Aoki, Sadhna Phanse, Azam F. Tayabali, Mohan Babu

Bibliographic record

VenueJournal of Proteome Research · 2025
Typearticle
Languageen
FieldMaterials Science
TopicNanoparticles: synthesis and applications
Canadian institutionsUniversity of ReginaUniversity of OttawaHealth Canada
FundersHealth Canada
KeywordsProteomicsMaterials scienceNanotechnologyChemistryBiochemistry

Abstract

fetched live from OpenAlex

High Resolution Image Download MS PowerPoint Slide There is an emerging interest in incorporating proteomic data for environmental health risk assessments. Meanwhile, the production and use of engineered nanomaterials (ENMs) with attractive physicochemical properties are expanding with the potential for exposure, thus necessitating toxicity information on these materials for health risk analysis, where proteomic data can be informative. Here, cells (A549 human lung epithelial and J774A.1 mouse monocyte/macrophage cells) were exposed to ENMs (nanoforms of SiO 2 and TiO 2 ) of different sizes and surface chemistries (dose: 0–100 μg/cm 2, 24 h) for in vitro toxicity data. Cytotoxicity (CTB, ATP, and LDH), oxidative stress (GSH oxidation), and proteomic analysis (MS- and antibody-based) were conducted post-nanoparticle (NP) exposure to determine the relative potency and identify perturbed cellular pathways. Dose-, nanoform-, and cell type-specific cytotoxicity changes were observed upon exposure to both nanoSiO 2 and nanoTiO 2 . Size, agglomeration, surface modification, and metal impurities appeared to be the determinants of cytotoxicity. Proteomic analysis identified some enriched mechanistic pathways and biological processes relevant to cell defense/phagocytosis, stress, metabolism, apoptosis, and inflammatory processes in J774A.1 cells exposed to these NPs. A549 cells exhibited enriched pathway/biological processes relevant to transport/endocytosis, stress, metabolism, and inflammatory processes post-NP exposures. Concordance was observed between the nanoform exposure- and cell type-related cytotoxicity responses, notably cellular ATP, which is critical for cell viability, oxidative stress, and cellular pathways/biological processes. These findings demonstrate the application of proteomics in regulatory toxicology and warrant further research in this direction.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.003
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.562

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0030.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.277
Teacher spread0.265 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes2
Has abstractyes

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