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Record W4408148427 · doi:10.1016/j.japb.2025.01.011

Genetic diversity of nearly threatened and vulnerable species of Serranidae fish family from the coastal area of Pakistan

2025· article· en· W4408148427 on OpenAlexaff
Mohsan Raza, Arif Khan, Sayyad Ali Raza Bukhari, Sher Khan Panhwar, Muhammad Ashfaq

Bibliographic record

VenueJournal of Asia-Pacific Biodiversity · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicFish Biology and Ecology Studies
Canadian institutionsUniversity of Guelph
FundersHigher Education Commision, Pakistan
KeywordsSerranidaeThreatened speciesFish <Actinopterygii>Genetic diversityFisheryGeographyDiversity (politics)EcologyBiologyEnvironmental healthPopulationPolitical scienceMedicine

Abstract

fetched live from OpenAlex

Species belonging to the Serranidae fish family exhibit an overlapping color pattern that may lead to misidentification in the field. Their color pattern varies from juveniles to adults. DNA barcoding of species Epinephelus bleekeri , Epinephelus erythrurus , Epinephelus epistictus , Epinephelus diacanthus, Epinephelus coioides, Epinephelus stoliczkae, Epinephelus latifasciatus, Epinephelus polylepis, Epinephelus aerolatus, Epinephelus morrhua, Epinephelus radiatus, and Cephalopholis formosa belonging to Serranidae fish family was done to substantiate existing knowledge based on taxonomic relationships. Samples were collected from fish landing facilities along the Pakistan coast. The 680 bp 5ʹ region of COI was amplified with the help of universal primers. After successful amplification sequencing was done using Sanger's method. Genetic diversity was calculated using obtained sequences. The mean interspecific genetic distance of 0.1444 was significantly higher than the mean intraspecific distance of 0.0051. The barcode gap analysis depicted significant genetic divergence affirming the delineation of species. The haplotype network gave valuable insights into the isolated and connected populations. The phylogenetic tree delineated apparent clades for all grouper species. The species having bars ( Epinephelus diacanthus and Epinephelus stoliczkae ) were clustered under the same clade and species having dots like ( Epinephelus bleekeri, Epinephelus polylepis , and Epienephelus areolatus ) were clustered under separate clade. DNA barcoding of the Serranidae fish family was done for the first time in Pakistan. The findings from the present study emphasized the importance of genetic-based sustainable management of fisheries, aquaculture, and the formation of conservation strategies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.028
Threshold uncertainty score0.337

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.195
Teacher spread0.172 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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