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Record W4408315861 · doi:10.1101/2025.03.09.25323612

Systematic Living Evidence for Clinical Trials (SyLECT): a data-driven framework for drug selection in clinical trials in motor neuron disease

2025· preprint· en· W4408315861 on OpenAlexaff
Charis Wong, Alessandra Cardinali, Bhuvaneish T. Selvaraj, Paul Baxter, Roderick N. Carter, James Longden, Rebecca E. Graham, Rachel Dakin, Suvankar Pal, Jeremy Chataway, Robert Swingler, Giles E. Hardingham, Neil O. Carragher, Siddharthan Chandran, Malcolm Macleod

Bibliographic record

VenuemedRxiv · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBioinformatics and Genomic Networks
Canadian institutionsDiscovery Centre
FundersTow FoundationTarget ALS
KeywordsMotor neuronClinical trialDiseaseSelection (genetic algorithm)Drug trialDrugPhysical medicine and rehabilitationMedicineNeurosciencePsychologyComputer scienceInternal medicinePharmacologyArtificial intelligence

Abstract

fetched live from OpenAlex

Abstract Despite many promising preclinical studies and decades of clinical trials, there remains a paucity of effective disease-modifying drugs in motor neuron disease. We aimed to develop a systematic and structured data-driven framework to identify, evaluate and prioritise candidate drugs for clinical trials, specifically for the Motor Neuron Disease-Systematic Multi-Arm Adaptive Randomised Trial (MND-SMART; NCT040302870). We developed the Systematic Living Evidence for Clinical Trials (SyLECT) platform as a modular framework integrating emerging data from different domains to inform prioritisation of candidate drugs. Current domains incorporated include published clinical, animal in vivo, and in vitro literature; in house in vitro high throughput drug screening; pathway and network analysis; and pharmacological, feasibility and clinical trial data from drug, chemical, and clinical trial databases. In this approach, we first identify a list of candidate drugs from these domains then select drugs for further consideration based on drug properties, feasibility, and expert opinion. For prioritised drugs we then generate, evaluate, and synthesise further evidence from across data domains. Using automated workflows and interactive web applications, we produce snapshot “living evidence summaries” to inform expert panel decisions on prioritisation of candidate drugs for MND-SMART. The third drug selected for MND-SMART and the first using this framework is amantadine. We demonstrated the feasibility of a systematic data-driven framework to inform prioritisation of candidate drugs for clinical trials in motor neuron disease, with potential for wider application across diseases where there is unmet clinical need. Key messages What is already known on this topic - Despite extensive preclinical research and clinical trials for disease-modifying treatments in motor neuron disease, translational success remains elusive. - Advances in research across biological domains presents a wealth of data to guide prioritisation of candidate drugs for clinical trials. What this study adds - This study demonstrates the feasibility of using a systematic, modular, data-driven framework to inform prioritisation of candidate drugs for an adaptive platform trial in motor neuron disease. How this study might affect research, practice or policy - The framework could be applied to inform prioritisation of drugs for clinical trials in other diseases, especially adaptive platform trials in neurodegenerative diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.351
metaresearch head score (Gemma)0.429
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Theoretical or conceptual · Consensus signal: none
GenreCandidate signal: Methods · Consensus signal: Methods
Teacher disagreement score0.351
Threshold uncertainty score0.800

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.3510.429
Meta-epidemiology (narrow)0.0050.004
Meta-epidemiology (broad)0.0070.016
Bibliometrics0.0200.011
Science and technology studies0.0020.006
Scholarly communication0.0170.009
Open science0.0080.016
Research integrity0.0060.010
Insufficient payload (model declined to judge)0.0100.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.280
GPT teacher head0.502
Teacher spread0.222 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designTheoretical or conceptual
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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