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Record W4408975093 · doi:10.1016/j.ympev.2025.108341

Novel island species elucidate a species complex of Neotropical crocodiles

2025· article· en· W4408975093 on OpenAlexafffund
Jose Avila Cervantes, Pierre Charruau, Hoai-Nam Bui, Miryam Venegas‐Anaya, Marta Vargas, Marco A. López‐Luna, Héctor González-Cortés, David A Macías-Díazg, Jonathan S Pérez-Flores, Gabriel Barrios-Quiroz, Jané Salazar, W. Owen McMillan, Hans C. E. Larsson

Bibliographic record

VenueMolecular Phylogenetics and Evolution · 2025
Typearticle
Languageen
FieldEarth and Planetary Sciences
TopicEvolution and Paleontology Studies
Canadian institutionsMcGill University
FundersSmithsonian Tropical Research InstituteNational Research Council CanadaCanada Foundation for InnovationNatural Sciences and Engineering Research Council of CanadaConsejo Nacional de Ciencia y TecnologíaMcGill University
KeywordsBiologyEcologySpecies complexEvolutionary biologyZoologyPhylogenetic treeGenetics

Abstract

fetched live from OpenAlex

• New collaborative research on the discovery of cryptic genetic diversity and rapid evolution of Neotropical crocodiles. • This is the first attempt to use full genomic RAD sequencing technology on crocodiles. • This works presents the first combined genomic and phenomic assessment of Neotropical crocodile evolution. • The work proposes two novel insular species of crocodiles highlighting their genetic, phenotypic, and geographic diversity. The evolutionary history of Neotropical crocodiles has remained elusive. They inhabit a broad geographic range with populations spanning from coastal, inland, and insular locations. Using a selection of natural insular, coastal, and one inland population of C. acutus , coastal C. moreletii , and the single surviving population of C. rhombifer , we discovered a remarkable genetic diversity for the group. Moreover, geometric morphometric results of skull shapes shows that these crocodylus species span a morphological cline. We recovered a high genetic differentiation between C. moreletii , C. rhombifer , and five clusters of C. acutus . The genetic and geographic differences among the C. acutus clusters were used to suggest these may be a species complex. Several ecological, morphological and genetics traits are identified in the well-studied populations from Banco Chinchorro and Cozumel islands off the Mexican Yucatan Peninsula to support discrete species designations for these populations. This work suggests the presence of rapid, recent evolution of several cryptic Crocodylus species throughout the Neotropics.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.085
Threshold uncertainty score0.449

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.221
Teacher spread0.204 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2025
Admission routes2
Has abstractyes

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