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Record W4409003617 · doi:10.1016/j.plaphy.2025.109841

Promiscuous and regiospecific Vinca minor hydroxylases for opioid akuammine biosynthesis and monoterpenoid indole alkaloid diversification

2025· article· en· W4409003617 on OpenAlexafffund
Zhan Mai, Matthew Bailey Richardson, S. G. MANN, Jacob Owen Perley, Ghislain Deslongchamps, Yang Qu

Bibliographic record

VenuePlant Physiology and Biochemistry · 2025
Typearticle
Languageen
FieldPharmacology, Toxicology and Pharmaceutics
TopicAlkaloids: synthesis and pharmacology
Canadian institutionsUniversity of New Brunswick
FundersNatural Sciences and Engineering Research Council of CanadaAlliance de recherche numérique du CanadaNew Brunswick Innovation Foundation
KeywordsIndole alkaloidBiosynthesisAlkaloidChemistryStereochemistryBiologyBotanyBiochemistryEnzyme

Abstract

fetched live from OpenAlex

The medicinal plant Vinca minor produces vincamine, a compound used for neurodegenerative diseases, along with a diverse array of monoterpenoid indole alkaloids (MIAs) primarily within the aspidosperma and akuammiline subclasses. While recent studies have elucidated the core biosynthetic pathways for these subclasses, the transformations of key intermediates into the vast diversity of naturally occurring alkaloids remain poorly understood. In this study, we identify and characterize two promiscuous cytochrome P450 monooxygenases (CYPs) in V. minor : vincaminoreine/pericyclivine 10-hydroxylase (VmV10H) and pseudoakuammigine 10-hydroxylase (VmPs10H), both exhibiting high substrate versatility. VmV10H catalyzes the hydroxylation of structurally diverse MIAs, including vincaminoreine, pericyclivine, apparicine, and akuammidine, while VmPs10H demonstrates a preference for akuammiline type MIAs such as pseudoakuammigine, picrinine, and strictamine. Homology modeling and substrate docking reveal active site architecture of these enzymes, suggesting a consistent mechanism for C10 hydroxylation across all substrates. The discovery of VmV10H and VmPs10H not only broadens our understanding of MIA biosynthesis but also expands the enzymatic toolkit for the metabolic engineering of pharmaceutical MIAs, including akuammine, a μ-opioid receptor agonist with analgesic properties. • Metabolic profiling reveals tissue-specific alkaloid accumulation in Vinca minor. • A new V. minor enzyme catalyzes vincaminoreine and pericyclivine 10-hydroxylation. • A second enzyme hydroxylates pseudoakuammigine/picrinine/strictamine at C10. • Homology modeling shows key features for reaction promiscuity and regiospecificity. • Pseudoakuammigine 10-hydroxylase enables the biosynthesis of the opioid akuammine.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.037
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.042
GPT teacher head0.339
Teacher spread0.297 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2025
Admission routes2
Has abstractyes

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