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Record W4409034348 · doi:10.1101/2025.03.31.646258

The molecular and cellular interplay between the osteopetrosis-associated proteins SNX10, OSTM1, and CLC-7 during osteoclastogenesis

2025· preprint· en· W4409034348 on OpenAlexaff
Nina Reuven, Sabina Winograd‐Katz, Maayan Barnea, Amir Pri-Or, Yishai Levin, Jean Vacher, Benjamin Geiger, Ari Elson

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBone Metabolism and Diseases
Canadian institutionsMontreal Clinical Research Institute
Fundersnot available
KeywordsOsteopetrosisCell biologyChemistryBiologyImmunology

Abstract

fetched live from OpenAlex

Abstract Bone-resorbing osteoclasts (OCLs) are large, multi-nucleated cells that are formed through well-regulated differentiation and cell fusion of monocyte-macrophage precursors. Disruption of OCL-mediated bone resorption perturbs bone formation, remodeling, and homeostasis that, in turn, can lead to severe illnesses, such as autosomal recessive osteopetrosis (ARO). Mutations in the intracellular trafficking-associated protein sorting nexin 10 (SNX10) lead to “OCL-rich” ARO, in which OCLs are produced but are inactive. Furthermore, OCL fusion is deregulated in SNX10-knockout (SKO) mice: mature mutant OCLs fuse continuously to generate gigantic cells, in vitro and in vivo, unlike wild-type OCLs that stop fusing with each other upon maturation. Mutations in CLC-7, the lysosomal voltage-gated Cl - /H + exchanger, and OSTM1, the beta-chain of the exchanger, also induce ARO in humans and in mouse models, and are associated with the presence of large OCLs. This study explored the molecular interplay between SNX10, CLC-7 and OSTM1 by directly comparing the phenotypes of cultured OCLs lacking one of these proteins. We show that loss of SNX10, OSTM1, or CLC-7 leads to the formation of similarly-gigantic OCLs in culture, due to deregulated fusion between mature OCLs that proceeds with similar kinetics. All three proteins are associated with LAMP1-positive lysosomes, localized in both perinuclear and peripheral regions of mature wild-type OCLs. Co-immunoprecipitation studies indicated that SNX10 physically interacts with CLC-7. Notably, SNX10-KO OCLs exhibited a significant reduction in peripheral lysosomes containing CLC-7 and OSTM1, suggesting that SNX10 is required for their transport to the cell periphery. Taken together, these findings indicate that SNX10 regulates the subcellular distribution of lysosomes containing CLC-7 and OSTM1, thereby controlling both the fusion and functionality of mature OCLs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.210
Teacher spread0.205 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2025
Admission routes1
Has abstractyes

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