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Record W4409153003 · doi:10.1016/j.celrep.2025.115499

A global collaboration for systematic analysis of broad-ranging antibodies against the SARS-CoV-2 spike protein

2025· article· en· W4409153003 on OpenAlexaff
Sharon L. Schendel, Xiaoying Yu, Peter Halfmann, Jarjapu Mahita, Brendan Ha, Kathryn M. Hastie, Haoyang Li, Daniel Bedinger, Camille Troup, Kan Li, Natalia A. Kuzmina, Jordi B. Torrelles, Jennifer E. Munt, Mary Osei-Twum, Heather Callaway, Stephen T. Reece, Anne Palser, Paul Kellam, S. Moses Dennison, Richard H.C. Huntwork, Gillian Q. Horn, Milite Abraha, Elizabeth Feeney, Luis Martínez‐Sobrido, Paula A. Pino, Amberlee Hicks, Chengjin Ye, Billie Maingot, Sivakumar Periasamy, Michael L. Mallory, Trevor Scobey, Marie-Noelle Lepage, Natalie St-Amant, S. Khan, Anaïs Gambiez, Ralph S. Baric, Alexander Bukreyev, Luc Gagnon, Timothy Germann, Yoshihiro Kawaoka, Georgia D. Tomaras, Bjoern Peters, Erica Ollmann Saphire

Bibliographic record

VenueCell Reports · 2025
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsNexen (Canada)
FundersOtsuka PharmaceuticalShionogiNational Institutes of HealthGHR FoundationBill and Melinda Gates Foundation
KeywordsSpike ProteinSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)Spike (software development)AntibodyVirologySars virusRangingCoronavirus disease 2019 (COVID-19)2019-20 coronavirus outbreakBiologyComputational biologyMedicineComputer scienceImmunologyOutbreakInternal medicineInfectious disease (medical specialty)Telecommunications

Abstract

fetched live from OpenAlex

The Coronavirus Immunotherapeutic Consortium (CoVIC) conducted side-by-side comparisons of over 400 anti-SARS-CoV-2 spike therapeutic antibody candidates contributed by large and small companies as well as academic groups on multiple continents. Nine reference labs analyzed antibody features, including in vivo protection in a mouse model of infection, spike protein affinity, high-resolution epitope binning, ACE-2 binding blockage, structures, and neutralization of pseudovirus and authentic virus infection, to build a publicly accessible dataset in the database CoVIC-DB. High-throughput, high-resolution binning of CoVIC antibodies defines a broad and predictive landscape of antibody epitopes on the SARS-CoV-2 spike protein and identifies features associated with durable potency against multiple SARS-CoV-2 variants of concern and high in vivo efficacy. Results of the CoVIC studies provide a guide for selecting effective and durable antibody therapeutics and for immunogen design as well as providing a framework for rapid response to future viral disease outbreaks.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.026
metaresearch head score (Gemma)0.017
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.026
Threshold uncertainty score0.138

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0260.017
Meta-epidemiology (narrow)0.0020.001
Meta-epidemiology (broad)0.0030.002
Bibliometrics0.0100.009
Science and technology studies0.0010.001
Scholarly communication0.0040.001
Open science0.0020.005
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0060.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.023
GPT teacher head0.352
Teacher spread0.329 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2025
Admission routes1
Has abstractyes

Explore more

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