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Record W4409727433 · doi:10.1101/2025.04.18.649532

† <i>Cryptovaranoides</i> is not a squamate

2025· preprint· en· W4409727433 on OpenAlexaff
Michael W. Caldwell, Chase Doran Brownstein, Dalton L. Meyer, Simon G. Scarpetta, Michael S. Y. Lee, Tiago R. Simões

Bibliographic record

VenuebioRxiv (Cold Spring Harbor Laboratory) · 2025
Typepreprint
Languageen
FieldMedicine
TopicResearch on Leishmaniasis Studies
Canadian institutionsUniversity of Alberta
Fundersnot available
KeywordsComputer science

Abstract

fetched live from OpenAlex

Abstract Accurate reconstruction of the timescale of organismal evolution requires placement of extinct representatives among living branches. In this way, the fossil record has the capacity to revise hypotheses of organismal evolution by producing representatives of clades that far pre-date the age of the clade inferred using phylogenies built from molecular data and previous fossil calibrations. Recently, one fossil with the potential to drastically change current understanding surrounding the timescale of reptile diversification was described from Triassic fissure-fill deposits in the United Kingdom. This taxon, † Cryptovaranoides microlanius , was originally placed deep within the squamate crown clade, suggesting that many lineages of living lizards and snakes must have appeared by the Triassic and implying long ghost lineages that paleontologists and molecular phylogeneticists have failed to detect using all other available data. Our team challenged this identification and instead suggested † Cryptovaranoides had unclear affinities to living reptiles, but a crown-squamate interpretation was later re-iterated by the team that originally described this species. Here, we again challenge the morphological character codings used to support a crown squamate affinity for † Cryptovaranoides microlanius and illustrate several empirical problems with analyses that find this taxon is a crown squamate. Our analyses emphasize the importance of stringency in constructing hypodigms of fossils, particularly when they may be key for proper time calibration of the Tree of Life.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.017

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0000.001
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0050.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.279
Teacher spread0.253 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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