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Record W4410014280 · doi:10.1016/j.microb.2025.100368

Integrative research: Current trends and considerations for biomarker discovery and precision medicine

2025· article· en· W4410014280 on OpenAlexaff
Jessica Cockburn, Vanitha Mariappan, Mun Fai Loke, Anis Rageh Al‐Maleki, Muttiah Barathan, Kumutha Malar Vellasamy, Jamuna Vadivelu

Bibliographic record

VenueThe Microbe · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer Genomics and Diagnostics
Canadian institutionsPrincess Margaret Cancer Centre
Fundersnot available
KeywordsPrecision medicineBiomarker discoveryData scienceCurrent (fluid)BiomarkerMedicineMedical physicsComputer scienceBiologyEngineeringPathologyProteomics

Abstract

fetched live from OpenAlex

The development of molecular biology, from the discovery of DNA's double-helix to current genomic tools, has revolutionized biomedical science. Integrative research, with the inclusion of genomic, proteomic, and clinical data, plays a critical role in biomarker identification and precision medicine. This review describes how integrative approaches enable better disease classification, such as breast cancer, for targeted therapy and improved patient care. Some of the most important technology advancements—next-generation sequencing, multi-omics integration, artificial intelligence, and single-cell omics—have sped up this field. With the use of directed and undirected biomarker discovery platforms, researchers can identify specific molecular markers or explore novel candidates in different biological layers. These methods have enabled the exploration of complex diseases, from COVID-19 to chronic conditions. Nevertheless, data complexity, computational limitations, and ethical concerns in personalized diagnosis persist. To overcome them, is the key to crossing the gap from computational knowledge into medical application. Enhancing the diagnostics of diseases, improving therapeutics' precision, and facilitating patient therapy are the general objectives of integrated investigations. By advancing the most technology available in computing and molecules, researchers are going towards more precision-guided and effective medicine. • Molecular biology and multi-omics enable targeted therapies and precise disease classification. • Key tools: next-generation sequencing, single-cell omics, AI-driven analytics. • Challenges: data integration, computational demands, clinical translation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Not applicable · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.548
Threshold uncertainty score0.158

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.056
GPT teacher head0.380
Teacher spread0.324 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designNot applicable
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations4
Published2025
Admission routes1
Has abstractyes

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