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Record W4410218486 · doi:10.1016/j.xgen.2025.100876

Identification of targetable vulnerabilities of PLK1-overexpressing cancers by synthetic dosage lethality

2025· article· en· W4410218486 on OpenAlexafffund
Chelsea E. Cunningham, Frederick S. Vizeacoumar, Yue Zhang, Liliia Kyrylenko, Simon Both, Vincent Maranda, He Dong, Jared D. W. Price, Peng Gao, Konrad Wagner, Yingwen Wu, Mary Lazell-Wright, Ashtalakshmi Ganapathysamy, Rithik Hari, Kalpana K. Bhanumathy, Connor Denomy, Anjali Saxena, Jeff Patrick Vizeacoumar, Alain Morejon Morales, Faizaan Khan, Shayla R. Mosley, A. Chen, Tetiana Katrii, Ben G. E. Zoller, Karthic Rajamanickam, Prachi Walke, Lihui Gong, Hardikkumar Patel, Hussain Elhasasna, Renuka Dahiya, Omar Abuhussein, Anton E. Dmitriev, Tanya Freywald, Érika Prando Munhoz, Eytan Ruppin, Joo Sang Lee, Katharina Rox, Martin Köebel, Laura Hopkins, Cheng‐Han Lee, Sunil Yadav, Gilles Gasparoni, Jörn Walter, Anand Krishnan, Raju Datla, Behzad M. Toosi, Kristi Baker, Jalna Meens, David W. Cescon, Laurie Ailles, Scot C. Leary, Yuliang Wu, Martin Empting, Alexandra K. Kiemer, Andrew Freywald, Franco J. Vizeacoumar

Bibliographic record

VenueCell Genomics · 2025
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicMicrotubule and mitosis dynamics
Canadian institutionsPrincess Margaret Cancer CentreUniversity Health NetworkCameco (Canada)University of CalgaryGlobal Institute for Water SecurityAgriculture and Agri-Food CanadaUniversity of SaskatchewanUniversity of AlbertaSaskatchewan Cancer Agency
FundersCanada Foundation for InnovationCanadian Institutes of Health ResearchMitacsSaskatchewan Health Research FoundationCancer Research SocietySaskatchewan Cancer AgencyDeutsche ForschungsgemeinschaftUniversity of Saskatchewan
KeywordsSynthetic lethalityLethalityIdentification (biology)Cancer researchMedicineComputational biologyBiologyToxicologyGeneticsDNA repairDNA

Abstract

fetched live from OpenAlex

Chromosomal instability (CIN) drives tumor heterogeneity, complicating cancer therapy. Although Polo-like kinase 1 (PLK1) overexpression induces CIN, direct inhibition of PLK1 has shown limited clinical benefits. We therefore performed a genome-wide synthetic dosage lethality (SDL) screen to identify effective alternative targets and validated over 100 candidates using in vivo and in vitro secondary CRISPR screens. We employed direct-capture Perturb-seq to assess the transcriptional consequences and viability of each SDL perturbation at a single-cell resolution. This revealed IGF2BP2 as a critical genetic dependency that, when targeted, downregulated PLK1 and significantly restricted tumor growth. Mechanistic analyses showed that IGF2BP2 loss disrupted cellular energy metabolism and mitochondrial ATP production by downregulating PLK1 levels as well as genes associated with oxidative phosphorylation. Consistent with this, pharmacological inhibition of IGF2BP2 severely impacts the viability of PLK1-overexpressing cancer cells addicted to higher metabolic rates. Our work offers a novel therapeutic strategy against PLK1-driven heterogeneous malignancies.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.219
Teacher spread0.215 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations5
Published2025
Admission routes2
Has abstractyes

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